Tell Bioformats not to "flatten" pyramids (labsyspharm#193)

If an input image has a thumbnail or other subresolution image, this change will allow us to read it without getting tripped up by the subresolutions.
openUC2 · May 11, 2023 · fe5c555 · fe5c555
1 parent 3091bf3
commit fe5c555
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/ashlar/reg.py b/ashlar/reg.py
@@ -226,6 +226,7 @@ def _init_metadata(self):
         metadata = service.createOMEXMLMetadata()
         self._reader = ChannelSeparator()
         self._reader.setMetadataStore(metadata)
+        self._reader.setFlattenedResolutions(False)
         # For multi-scene .CZI files, we need raw tiles instead of the
         # auto-stitched mosaic and we don't want labels or overview images
         options = DynamicMetadataOptions()