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Fix empty STL export and CI failure issues #34

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merged 7 commits into from
Dec 7, 2023
Merged

Fix empty STL export and CI failure issues #34

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4064aac
Fix empty STL export
Kayvv Dec 5, 2023
a6727e4
Add more test case and rename the functions
Kayvv Dec 5, 2023
9b1fbe8
Remove unnecessary test case
Kayvv Dec 7, 2023
fa8d0f8
Merge branch 'nih-sparc:main' into zinchelper
Kayvv Dec 7, 2023
036c1cc
Fix reviewdog format
Kayvv Dec 7, 2023
79ccd4b
Merge remote-tracking branch 'origin/zinchelper' into zinchelper
Kayvv Dec 7, 2023
7e4cb7a
Reviewdog fix
Kayvv Dec 7, 2023
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Fix reviewdog format
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@Kayvv
Kayvv committed Dec 7, 2023
commit 036c1cc581c7db2d9bcb06eff8f887c915aae524
4 changes: 2 additions & 2 deletions src/sparc/client/zinchelper.py
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Original file line number Diff line number Diff line change
Expand Up @@ -2,8 +2,8 @@
import os
import re

from cmlibs.exporter.vtk import ArgonSceneExporter as VTKExporter
from cmlibs.exporter.stl import ArgonSceneExporter as STLExporter
from cmlibs.exporter.vtk import ArgonSceneExporter as VTKExporter
from cmlibs.utils.zinc.field import get_group_list, field_exists
from cmlibs.zinc.context import Context
from cmlibs.zinc.result import RESULT_OK
Expand Down Expand Up @@ -171,7 +171,7 @@ def get_scaffold_as_stl(self, dataset_id, output_location=None):
field_iterator = fm.createFielditerator()
field = field_iterator.next()
while field.isValid() and not coordinates.isValid():
if field_exists(fm, field.getName(), 'FiniteElement', 3):
if field_exists(fm, field.getName(), "FiniteElement", 3):
coordinates = field

field = field_iterator.next()
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4 changes: 1 addition & 3 deletions tests/test_zinc.py
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Expand Up @@ -76,9 +76,7 @@ def _mock_get_scaffold(self, dataset_id):

def test_export_scaffold_into_stl_format_non_default_coordinates(zinc):
# create a temporary output file
output_location = os.path.abspath(
os.path.join(os.path.dirname(__file__), "resources/")
)
output_location = os.path.abspath(os.path.join(os.path.dirname(__file__), "resources/"))

zinc._get_scaffold = _mock_get_scaffold.__get__(zinc)

Expand Down