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FIND_ASSEMBLIES returns error code when no results are found

bugSomething isn't workingSomething isn't working

good first issueGood for newcomersGood for newcomers

Status: Open.

Bug

#133 In nf-core/pathogensurveillance;

· zachary-foster opened on Jan 14, 2025

BWA. paired reads have different names: "SRR1655713.931913", "SRR1655713.3"

Status: Open.

#132 In nf-core/pathogensurveillance;

· cahuparo opened on Dec 30, 2024

Additional IQTREE2 issue-bootstrap error when less than 4 samples

bugSomething isn't workingSomething isn't working

Status: Open.

#129 In nf-core/pathogensurveillance;

· masudermann opened on Dec 18, 2024

Can't to pick contextual reference for validation dataset.

Status: Open.

#127 In nf-core/pathogensurveillance;

· cahuparo opened on Dec 16, 2024

Use NCBI metadata for defualt coloring of plots

Status: Open.

#125 In nf-core/pathogensurveillance;

· zachary-foster opened on Dec 3, 2024

IQ-tree SNP error

Status: Open.

#124 In nf-core/pathogensurveillance;

· buchanri opened on Dec 3, 2024

Error if users give percentages to arguments that require proportions

Status: Open.

#123 In nf-core/pathogensurveillance;

· zachary-foster opened on Dec 2, 2024

Replace VCF_TO_TAB and VCF_TO_SNPALN with a single R script or other command

Status: Open.

#122 In nf-core/pathogensurveillance;

· zachary-foster opened on Nov 21, 2024

ASSIGN_CONTEXT_REFERENCES error

Status: Open.

#121 In nf-core/pathogensurveillance;

· cahuparo opened on Nov 21, 2024

Consider changing MSN threshold to number of SNPs

Status: Open.

#120 In nf-core/pathogensurveillance;

· zachary-foster opened on Nov 19, 2024

Add scale bars to trees

Status: Open.

#119 In nf-core/pathogensurveillance;

· zachary-foster opened on Nov 19, 2024

BUSCO error = BrokenPipeError: [Errno 32] Broken pipe

Status: Open.

#118 In nf-core/pathogensurveillance;

· cahuparo opened on Nov 19, 2024