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fix bismark_hisat test_full run

bugSomething isn't workingSomething isn't working

Status: Open.

#500 In nf-core/methylseq;

· sateeshperi opened on Dec 18, 2024

add comprehensive param tests

Status: Open.

#498 In nf-core/methylseq;

· sateeshperi opened on Dec 17, 2024

 ·  

3.1.0

Bismark soft clip --local_alignment True keeps L,value,value

bugSomething isn't workingSomething isn't working

Status: Open.

#472 In nf-core/methylseq;

· ioannagare opened on Nov 27, 2024

Update multiqc output with bwameth metrics

enhancementNew feature or requestNew feature or request

Status: Open.

#463 In nf-core/methylseq;

· sateeshperi opened on Nov 22, 2024

Addition of --mergeContext for MethylDackel

enhancementNew feature or requestNew feature or request

Status: Open.

#460 In nf-core/methylseq;

· dcarrillox opened on Nov 21, 2024

 ·  

3.1.0

Add minimap2 as aligner option for Bismark

enhancementNew feature or requestNew feature or request

Status: Open.

#455 In nf-core/methylseq;

· FelixKrueger opened on Nov 12, 2024

Adding --maxVariantFrac and --minOppositeDepth to MethylDackel (Bwameth option)

enhancementNew feature or requestNew feature or request

Status: Open.

#404 In nf-core/methylseq;

· LucaZanella15 opened on Jun 18, 2024

AS-XS tag missing

enhancementNew feature or requestNew feature or request

Status: Open.

#397 In nf-core/methylseq;

· AndreiWCansor opened on May 1, 2024

Specify additional "genomes" of spike-in controls for downstream calculation of bisulfite conversion efficiency

enhancementNew feature or requestNew feature or request

Status: Open.

#394 In nf-core/methylseq;

· pdemko opened on Apr 1, 2024

--rrbs and --emseq parameter and argument usage

enhancementNew feature or requestNew feature or request

Status: Open.

#389 In nf-core/methylseq;

· deep-buddingcoder opened on Mar 20, 2024

CG CHG and CHH with --comprehensive flag using bismark workflow

enhancementNew feature or requestNew feature or request

Status: Open.

#388 In nf-core/methylseq;

· MMJBerger opened on Mar 13, 2024

 ·  

3.1.0

Support for NuGEN Ovation RRBS

enhancementNew feature or requestNew feature or request

Status: Open.

#376 In nf-core/methylseq;

· jma1991 opened on Jan 19, 2024