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fasterq-dump => disk: local-ssd

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#332 In nf-core/fetchngs;

· nick-youngblut opened on Jan 11, 2025

Incorrect MD5 checksums being used for some files

bugSomething isn't workingSomething isn't working

Status: Open.

#331 In nf-core/fetchngs;

· tanaes opened on Jan 9, 2025

1.11.0 works while 1.12.0 fails for apptainer+wget ( wget: unable to resolve host address 'ftp.sra.ebi.ac.uk' )

bugSomething isn't workingSomething isn't working

Status: Open.

#328 In nf-core/fetchngs;

· lindenb opened on Dec 9, 2024

Incorrect fastq paths in scRNA-seq sample sheet

bugSomething isn't workingSomething isn't working

Status: Open.

#326 In nf-core/fetchngs;

· huldash opened on Nov 29, 2024

Update some modeles for TES compliance

bugSomething isn't workingSomething isn't working

Status: Open.

#318 In nf-core/fetchngs;

· vsmalladi opened on Sep 13, 2024

SRATOOLS_FASTERQDUMP failing due to missing fastq file

bugSomething isn't workingSomething isn't working

Status: Open.

#317 In nf-core/fetchngs;

· edg1983 opened on Jul 24, 2024

Support for CNBG

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#315 In nf-core/fetchngs;

· nathaniel-mahieu opened on Jul 1, 2024

DDBJ study ids (DRP123456) do not map correctly

bugSomething isn't workingSomething isn't working

Status: Open.

#314 In nf-core/fetchngs;

· awalsh17 opened on Jul 1, 2024

Support for GSA accessions

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#313 In nf-core/fetchngs;

· millerh1 opened on May 30, 2024

SRA file links deprecated

bugSomething isn't workingSomething isn't working

Status: Open.

#301 In nf-core/fetchngs;

· tiendu opened on Mar 7, 2024

wget host address error

bugSomething isn't workingSomething isn't working

Status: Open.

#291 In nf-core/fetchngs;

· mniederhuber opened on Feb 23, 2024

Merge technical replicates (SRR1 + SRR2 -> SRX)

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#270 In nf-core/fetchngs;

· millerh1 opened on Feb 6, 2024