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Remove params.outdir in favor of outputDir
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Signed-off-by: Ben Sherman <bentshermann@gmail.com>
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bentsherman committed Nov 5, 2024
1 parent 1801907 commit acd9b8a
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Showing 2 changed files with 0 additions and 13 deletions.
6 changes: 0 additions & 6 deletions nextflow.config
Original file line number Diff line number Diff line change
Expand Up @@ -16,15 +16,9 @@ manifest {
nextflowVersion = '>=23.10.0'
}

/*
* config params
*/
params.outdir = 'results'

/*
* configure outputs publishing
*/
outputDir = params.outdir
workflow.output.mode = 'copy'

/*
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7 changes: 0 additions & 7 deletions nextflow_schema.json
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Expand Up @@ -11,13 +11,6 @@
"fa_icon": "fas fa-terminal",
"description": "Define where the pipeline should find input data and save output data.",
"properties": {
"outdir": {
"type": "string",
"format": "directory-path",
"description": "The output directory where the results will be saved. You have to use absolute paths to storage on Cloud infrastructure.",
"fa_icon": "fas fa-folder-open",
"default": "results"
},
"reads": {
"type": "string",
"description": "The input read-pair files",
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