From 794806beb37d76e245624f5d559d1606fd2ea68e Mon Sep 17 00:00:00 2001 From: Maria Patterson Date: Mon, 24 Apr 2017 16:04:16 -0700 Subject: [PATCH] First commit --- Dockerfile | 11 + README.md | 25 + notebooks/01-spark-streaming-kafka-avro.ipynb | 1965 +++ notebooks/01-spark-streaming-kafka.ipynb | 404 + .../html/01-spark-streaming-kafka-avro.html | 13783 ++++++++++++++++ notebooks/html/01-spark-streaming-kafka.html | 12185 ++++++++++++++ 6 files changed, 28373 insertions(+) create mode 100644 Dockerfile create mode 100644 README.md create mode 100644 notebooks/01-spark-streaming-kafka-avro.ipynb create mode 100644 notebooks/01-spark-streaming-kafka.ipynb create mode 100644 notebooks/html/01-spark-streaming-kafka-avro.html create mode 100644 notebooks/html/01-spark-streaming-kafka.html diff --git a/Dockerfile b/Dockerfile new file mode 100644 index 0000000..0caabcb --- /dev/null +++ b/Dockerfile @@ -0,0 +1,11 @@ +FROM jupyter/all-spark-notebook +LABEL maintainer "maria.t.patterson@gmail.com" +ENV REFRESHED_AT 2017-04-20 + +# Get schemas. # TODO update to checkout master when schema is updated +WORKDIR /home/jovyan +RUN git clone https://github.com/lsst-dm/sample-avro-alert.git && cd sample-avro-alert && git checkout tickets/DM-8160 + +WORKDIR /home/jovyan/work +ADD requirements.txt . +RUN pip install -r requirements.txt diff --git a/README.md b/README.md new file mode 100644 index 0000000..74c6294 --- /dev/null +++ b/README.md @@ -0,0 +1,25 @@ +bilao +============ + +Serving up winnowed data. + +Usage +------------------- + +``` +docker build . -t "bilao" +``` + +Some notebooks assume use with the [LSST DM alert_stream testbed](github.com/lsst-dm/alert_stream) on a running Docker network for that testbed, named "alertstream_default", as in the configuration below. + +Follow the instructions to access the Notebook server after running: + +``` +docker run -it \ + --rm \ + -v $PWD:/home/jovyan/work:rw \ + -p 8888:8888 -p 4040:4040 \ + --network=alertstream_default \ + -P \ + bilao +``` diff --git a/notebooks/01-spark-streaming-kafka-avro.ipynb b/notebooks/01-spark-streaming-kafka-avro.ipynb new file mode 100644 index 0000000..17a39c2 --- /dev/null +++ b/notebooks/01-spark-streaming-kafka-avro.ipynb @@ -0,0 +1,1965 @@ +{ + "cells": [ + { + "cell_type": "markdown", + "metadata": { + "deletable": true, + "editable": true + }, + "source": [ + "# Spark Streaming from Kafka with Avro formatted data\n", + "\n", + "Example of using Spark to connect to Kafka and using Spark Streaming to process a Kafka stream of Avro (schemaless) objects." + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## Set up schemas for decoding\n", + "\n", + "Schemas are pulled automatically from Github during Docker build." + ] + }, + { + "cell_type": "code", + "execution_count": 1, + "metadata": { + "collapsed": false + }, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "alert.avsc diaobject.avsc simple.avsc\r\n", + "cutout.avsc diasource.avsc ssobject.avsc\r\n" + ] + } + ], + "source": [ + "!ls ../../sample-avro-alert/schema" + ] + }, + { + "cell_type": "code", + "execution_count": 2, + "metadata": { + "collapsed": false + }, + "outputs": [], + "source": [ + "schema_files = [\"../../sample-avro-alert/schema/diasource.avsc\",\n", + " \"../../sample-avro-alert/schema/diaobject.avsc\",\n", + " \"../../sample-avro-alert/schema/ssobject.avsc\",\n", + " \"../../sample-avro-alert/schema/cutout.avsc\",\n", + " \"../../sample-avro-alert/schema/alert.avsc\"]" + ] + }, + { + "cell_type": "code", + "execution_count": 3, + "metadata": { + "collapsed": true + }, + "outputs": [], + "source": [ + "import fastavro\n", + "import avro.schema\n", + "import json" + ] + }, + { + "cell_type": "code", + "execution_count": 4, + "metadata": { + "collapsed": true + }, + "outputs": [], + "source": [ + "def loadSingleAvsc(file_path, names):\n", + " \"\"\"Load a single avsc file.\n", + " \"\"\"\n", + " with open(file_path) as file_text:\n", + " json_data = json.load(file_text)\n", + " schema = avro.schema.SchemaFromJSONData(json_data, names)\n", + " return schema" + ] + }, + { + "cell_type": "code", + "execution_count": 5, + "metadata": { + "collapsed": true + }, + "outputs": [], + "source": [ + "def combineSchemas(schema_files):\n", + " \"\"\"Combine multiple nested schemas into a single schema.\n", + " \"\"\"\n", + " known_schemas = avro.schema.Names()\n", + "\n", + " for s in schema_files:\n", + " schema = loadSingleAvsc(s, known_schemas)\n", + " return schema.to_json()" + ] + }, + { + "cell_type": "code", + "execution_count": 6, + "metadata": { + "collapsed": false + }, + "outputs": [], + "source": [ + "schema = combineSchemas(schema_files)" + ] + }, + { + "cell_type": "code", + "execution_count": 7, + "metadata": { + "collapsed": false + }, + "outputs": [ + { + "data": { + "text/plain": [ + "{'doc': 'sample avro alert schema v1.0',\n", + " 'fields': [{'doc': 'add descriptions like this',\n", + " 'name': 'alertId',\n", + " 'type': 'long'},\n", + " {'name': 'l1dbId', 'type': 'long'},\n", + " {'name': 'diaSource',\n", + " 'type': {'fields': [{'name': 'diaSourceId', 'type': 'long'},\n", + " {'name': 'ccdVisitId', 'type': 'long'},\n", + " {'default': None, 'name': 'diaObjectId', 'type': ['long', 'null']},\n", + " {'default': None, 'name': 'ssObjectId', 'type': ['long', 'null']},\n", + " {'default': None, 'name': 'parentDiaSourceId', 'type': ['long', 'null']},\n", + " {'name': 'midPointTai', 'type': 'double'},\n", + " {'name': 'filterName', 'type': 'string'},\n", + " {'name': 'ra', 'type': 'double'},\n", + " {'name': 'decl', 'type': 'double'},\n", + " {'name': 'ra_decl_Cov',\n", + " 'type': [{'fields': [{'name': 'raSigma', 'type': 'float'},\n", + " {'name': 'declSigma', 'type': 'float'},\n", + " {'name': 'ra_decl_Cov', 'type': 'float'}],\n", + " 'name': 'ra_decl_Cov',\n", + " 'namespace': 'lsst.alert',\n", + " 'type': 'record'}]},\n", + " {'name': 'x', 'type': 'float'},\n", + " {'name': 'y', 'type': 'float'},\n", + " {'name': 'x_y_Cov',\n", + " 'type': [{'fields': [{'name': 'xSigma', 'type': 'float'},\n", + " {'name': 'ySigma', 'type': 'float'},\n", + " {'name': 'x_y_Cov', 'type': 'float'}],\n", + " 'name': 'x_y_Cov',\n", + " 'namespace': 'lsst.alert',\n", + " 'type': 'record'}]},\n", + " {'default': None,\n", + " 'name': 'apFlux',\n", + " 'type': [{'fields': [{'aliases': ['base_CircularApertureFlux_3_0_flux'],\n", + " 'default': None,\n", + " 'name': 'apMeanSb01',\n", + " 'type': ['float', 'null']},\n", + " {'aliases': ['base_CircularApertureFlux_4_5_flux'],\n", + " 'default': None,\n", + " 'name': 'apMeanSb02',\n", + " 'type': ['float', 'null']},\n", + " {'aliases': ['base_CircularApertureFlux_6_0_flux'],\n", + " 'default': None,\n", + " 'name': 'apMeanSb03',\n", + " 'type': ['float', 'null']},\n", + " {'aliases': ['base_CircularApertureFlux_9_0_flux'],\n", + " 'default': None,\n", + " 'name': 'apMeanSb04',\n", + " 'type': ['float', 'null']},\n", + " {'aliases': ['base_CircularApertureFlux_12_0_flux'],\n", + " 'default': None,\n", + " 'name': 'apMeanSb05',\n", + " 'type': ['float', 'null']},\n", + " {'aliases': ['base_CircularApertureFlux_17_0_flux'],\n", + " 'default': None,\n", + " 'name': 'apMeanSb06',\n", + " 'type': ['float', 'null']},\n", + " {'aliases': ['base_CircularApertureFlux_25_0_flux'],\n", + " 'default': None,\n", + " 'name': 'apMeanSb07',\n", + " 'type': ['float', 'null']},\n", + " {'aliases': ['base_CircularApertureFlux_35_0_flux'],\n", + " 'default': None,\n", + " 'name': 'apMeanSb08',\n", + " 'type': ['float', 'null']},\n", + " {'aliases': ['base_CircularApertureFlux_50_0_flux'],\n", + " 'default': None,\n", + " 'name': 'apMeanSb09',\n", + " 'type': ['float', 'null']},\n", + " {'aliases': ['base_CircularApertureFlux_70_0_flux'],\n", + " 'default': None,\n", + " 'name': 'apMeanSb10',\n", + " 'type': ['float', 'null']}],\n", + " 'name': 'apFlux',\n", + " 'namespace': 'lsst.alert',\n", + " 'type': 'record'},\n", + " 'null']},\n", + " {'default': None,\n", + " 'name': 'apFluxErr',\n", + " 'type': [{'fields': [{'aliases': ['base_CircularApertureFlux_3_0_fluxSigma'],\n", + " 'default': None,\n", + " 'name': 'apMeanSb01Err',\n", + " 'type': ['float', 'null']},\n", + " {'aliases': ['base_CircularApertureFlux_4_5_fluxSigma'],\n", + " 'default': None,\n", + " 'name': 'apMeanSb02Err',\n", + " 'type': ['float', 'null']},\n", + " {'aliases': ['base_CircularApertureFlux_6_0_fluxSigma'],\n", + " 'default': None,\n", + " 'name': 'apMeanSb03Err',\n", + " 'type': ['float', 'null']},\n", + " {'aliases': ['base_CircularApertureFlux_9_0_fluxSigma'],\n", + " 'default': None,\n", + " 'name': 'apMeanSb04Err',\n", + " 'type': ['float', 'null']},\n", + " {'aliases': ['base_CircularApertureFlux_12_0_fluxSigma'],\n", + " 'default': None,\n", + " 'name': 'apMeanSb05Err',\n", + " 'type': ['float', 'null']},\n", + " {'aliases': ['base_CircularApertureFlux_17_0_fluxSigma'],\n", + " 'default': None,\n", + " 'name': 'apMeanSb06Err',\n", + " 'type': ['float', 'null']},\n", + " {'aliases': ['base_CircularApertureFlux_25_0_fluxSigma'],\n", + " 'default': None,\n", + " 'name': 'apMeanSb07Err',\n", + " 'type': ['float', 'null']},\n", + " {'aliases': ['base_CircularApertureFlux_35_0_fluxSigma'],\n", + " 'default': None,\n", + " 'name': 'apMeanSb08Err',\n", + " 'type': ['float', 'null']},\n", + " {'aliases': ['base_CircularApertureFlux_50_0_fluxSigma'],\n", + " 'default': None,\n", + " 'name': 'apMeanSb09Err',\n", + " 'type': ['float', 'null']},\n", + " {'aliases': ['base_CircularApertureFlux_70_0_fluxSigma'],\n", + " 'default': None,\n", + " 'name': 'apMeanSb10Err',\n", + " 'type': ['float', 'null']}],\n", + " 'name': 'apFluxErr',\n", + " 'namespace': 'lsst.alert',\n", + " 'type': 'record'},\n", + " 'null']},\n", + " {'name': 'snr', 'type': 'float'},\n", + " {'name': 'psFlux', 'type': 'float'},\n", + " {'default': None, 'name': 'psRa', 'type': ['double', 'null']},\n", + " {'default': None, 'name': 'psDecl', 'type': ['double', 'null']},\n", + " {'default': None,\n", + " 'name': 'ps_Cov',\n", + " 'type': [{'fields': [{'name': 'psFluxSigma', 'type': 'float'},\n", + " {'name': 'psRaSigma', 'type': 'float'},\n", + " {'name': 'psDeclSigma', 'type': 'float'},\n", + " {'name': 'psFlux_psRa_Cov', 'type': 'float'},\n", + " {'name': 'psFlux_psDecl_Cov', 'type': 'float'},\n", + " {'name': 'psRa_psDecl_Cov', 'type': 'float'}],\n", + " 'name': 'ps_Cov',\n", + " 'namespace': 'lsst.alert',\n", + " 'type': 'record'},\n", + " 'null']},\n", + " {'default': None, 'name': 'psLnL', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'psChi2', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'psNdata', 'type': ['int', 'null']},\n", + " {'default': None, 'name': 'trailFlux', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'trailRa', 'type': ['double', 'null']},\n", + " {'default': None, 'name': 'trailDecl', 'type': ['double', 'null']},\n", + " {'default': None, 'name': 'trailLength', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'trailAngle', 'type': ['float', 'null']},\n", + " {'default': None,\n", + " 'name': 'trail_Cov',\n", + " 'type': [{'fields': [{'name': 'trailFluxSigma', 'type': 'float'},\n", + " {'name': 'trailRaSigma', 'type': 'float'},\n", + " {'name': 'trailDeclSigma', 'type': 'float'},\n", + " {'name': 'trailLengthSigma', 'type': 'float'},\n", + " {'name': 'trailAngleSigma', 'type': 'float'},\n", + " {'name': 'trailFlux_trailRa_Cov', 'type': 'float'},\n", + " {'name': 'trailFlux_trailDecl_Cov', 'type': 'float'},\n", + " {'name': 'trailFlux_trailLength_Cov', 'type': 'float'},\n", + " {'name': 'trailFlux_trailAngle_Cov', 'type': 'float'},\n", + " {'name': 'trailRa_trailDecl_Cov', 'type': 'float'},\n", + " {'name': 'trailRa_trailLength_Cov', 'type': 'float'},\n", + " {'name': 'trailRa_trailAngle_Cov', 'type': 'float'},\n", + " {'name': 'trailDecl_trailLength_Cov', 'type': 'float'},\n", + " {'name': 'trailDecl_trailAngle_Cov', 'type': 'float'},\n", + " {'name': 'trailLength_trailAngle_Cov', 'type': 'float'}],\n", + " 'name': 'trail_Cov',\n", + " 'namespace': 'lsst.alert',\n", + " 'type': 'record'},\n", + " 'null']},\n", + " {'default': None, 'name': 'trailLnL', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'trailChi2', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'trailNdata', 'type': ['int', 'null']},\n", + " {'default': None, 'name': 'dipMeanFlux', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'dipFluxDiff', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'dipRa', 'type': ['double', 'null']},\n", + " {'default': None, 'name': 'dipDecl', 'type': ['double', 'null']},\n", + " {'default': None, 'name': 'dipLength', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'dipAngle', 'type': ['float', 'null']},\n", + " {'default': None,\n", + " 'name': 'dip_Cov',\n", + " 'type': [{'fields': [{'name': 'dipMeanFluxSigma', 'type': 'float'},\n", + " {'name': 'dipFluxDiffSigma', 'type': 'float'},\n", + " {'name': 'dipRaSigma', 'type': 'float'},\n", + " {'name': 'dipDeclSigma', 'type': 'float'},\n", + " {'name': 'dipLengthSigma', 'type': 'float'},\n", + " {'name': 'dipAngleSigma', 'type': 'float'},\n", + " {'name': 'dipMeanFlux_dipFluxDiff_Cov', 'type': 'float'},\n", + " {'name': 'dipMeanFlux_dipRa_Cov', 'type': 'float'},\n", + " {'name': 'dipMeanFlux_dipDecl_Cov', 'type': 'float'},\n", + " {'name': 'dipMeanFlux_dipLength_Cov', 'type': 'float'},\n", + " {'name': 'dipMeanFlux_dipAngle_Cov', 'type': 'float'},\n", + " {'name': 'dipFluxDiff_dipRa_Cov', 'type': 'float'},\n", + " {'name': 'dipFluxDiff_dipDecl_Cov', 'type': 'float'},\n", + " {'name': 'dipFluxDiff_dipLength_Cov', 'type': 'float'},\n", + " {'name': 'dipFluxDiff_dipAngle_Cov', 'type': 'float'},\n", + " {'name': 'dipRa_dipDecl_Cov', 'type': 'float'},\n", + " {'name': 'dipRa_dipLength_Cov', 'type': 'float'},\n", + " {'name': 'dipRa_dipAngle_Cov', 'type': 'float'},\n", + " {'name': 'dipDecl_dipLength_Cov', 'type': 'float'},\n", + " {'name': 'dipDecl_dipAngle_Cov', 'type': 'float'},\n", + " {'name': 'dipLength_dipAngle_Cov', 'type': 'float'}],\n", + " 'name': 'dip_Cov',\n", + " 'namespace': 'lsst.alert',\n", + " 'type': 'record'},\n", + " 'null']},\n", + " {'default': None, 'name': 'dipLnL', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'dipChi2', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'dipNdata', 'type': ['int', 'null']},\n", + " {'aliases': ['fpFlux'],\n", + " 'default': None,\n", + " 'name': 'totFlux',\n", + " 'type': ['float', 'null']},\n", + " {'aliases': ['fpFluxSigma'],\n", + " 'default': None,\n", + " 'name': 'totFluxErr',\n", + " 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'diffFlux', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'diffFluxErr', 'type': ['float', 'null']},\n", + " {'aliases': ['fpSky'],\n", + " 'default': None,\n", + " 'name': 'fpBkgd',\n", + " 'type': ['float', 'null']},\n", + " {'aliases': ['fpSkySigma'],\n", + " 'default': None,\n", + " 'name': 'fpBkgdErr',\n", + " 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'ixx', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'iyy', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'ixy', 'type': ['float', 'null']},\n", + " {'default': None,\n", + " 'name': 'i_cov',\n", + " 'type': [{'fields': [{'name': 'ixxSigma', 'type': 'float'},\n", + " {'name': 'iyySigma', 'type': 'float'},\n", + " {'name': 'ixySigma', 'type': 'float'},\n", + " {'name': 'ixx_iyy_Cov', 'type': 'float'},\n", + " {'name': 'ixx_ixy_Cov', 'type': 'float'},\n", + " {'name': 'iyy_ixy_Cov', 'type': 'float'}],\n", + " 'name': 'i_cov',\n", + " 'namespace': 'lsst.alert',\n", + " 'type': 'record'},\n", + " 'null']},\n", + " {'default': None, 'name': 'ixxPSF', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'iyyPSF', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'ixyPSF', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'extendedness', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'spuriousness', 'type': ['float', 'null']},\n", + " {'name': 'flags', 'type': 'long'}],\n", + " 'name': 'diaSource',\n", + " 'namespace': 'lsst.alert',\n", + " 'type': 'record'}},\n", + " {'default': None,\n", + " 'name': 'prv_diaSources',\n", + " 'type': [{'items': 'lsst.alert.diaSource', 'type': 'array'}, 'null']},\n", + " {'default': None,\n", + " 'name': 'diaObject',\n", + " 'type': [{'fields': [{'name': 'diaObjectId', 'type': 'long'},\n", + " {'name': 'ra', 'type': 'double'},\n", + " {'name': 'decl', 'type': 'double'},\n", + " {'name': 'ra_decl_Cov',\n", + " 'type': [{'fields': [{'name': 'raSigma', 'type': 'float'},\n", + " {'name': 'declSigma', 'type': 'float'},\n", + " {'name': 'ra_decl_Cov', 'type': 'float'}],\n", + " 'name': 'ra_decl_Cov',\n", + " 'namespace': 'lsst',\n", + " 'type': 'record'}]},\n", + " {'name': 'radecTai', 'type': 'double'},\n", + " {'name': 'pmRa', 'type': 'float'},\n", + " {'name': 'pmDecl', 'type': 'float'},\n", + " {'name': 'parallax', 'type': 'float'},\n", + " {'name': 'pm_parallax_Cov',\n", + " 'type': [{'fields': [{'name': 'pmRaSigma', 'type': 'float'},\n", + " {'name': 'pmDeclSigma', 'type': 'float'},\n", + " {'name': 'parallaxSigma', 'type': 'float'},\n", + " {'name': 'pmRa_pmDecl_Cov', 'type': 'float'},\n", + " {'name': 'pmRa_parallax_Cov', 'type': 'float'},\n", + " {'name': 'pmDecl_parallax_Cov', 'type': 'float'}],\n", + " 'name': 'pm_parallax_Cov',\n", + " 'namespace': 'lsst',\n", + " 'type': 'record'}]},\n", + " {'name': 'pmParallaxLnL', 'type': 'float'},\n", + " {'name': 'pmParallaxChi2', 'type': 'float'},\n", + " {'name': 'pmParallaxNdata', 'type': 'int'},\n", + " {'default': None, 'name': 'uPSFluxMean', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'uPSFluxMeanErr', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'uPSFluxSigma', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'uPSFluxChi2', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'uPSFluxNdata', 'type': ['int', 'null']},\n", + " {'default': None, 'name': 'gPSFluxMean', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'gPSFluxMeanErr', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'gPSFluxSigma', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'gPSFluxChi2', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'gPSFluxNdata', 'type': ['int', 'null']},\n", + " {'default': None, 'name': 'rPSFluxMean', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'rPSFluxMeanErr', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'rPSFluxSigma', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'rPSFluxChi2', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'rPSFluxNdata', 'type': ['int', 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['double', 'null']},\n", + " {'default': None, 'name': 'e_epoch_Cov', 'type': ['double', 'null']},\n", + " {'default': None, 'name': 'i_lan_Cov', 'type': ['double', 'null']},\n", + " {'default': None, 'name': 'i_aop_Cov', 'type': ['double', 'null']},\n", + " {'default': None, 'name': 'i_M_Cov', 'type': ['double', 'null']},\n", + " {'default': None, 'name': 'i_epoch_Cov', 'type': ['double', 'null']},\n", + " {'default': None, 'name': 'lan_aop_Cov', 'type': ['double', 'null']},\n", + " {'default': None, 'name': 'lan_M_Cov', 'type': ['double', 'null']},\n", + " {'default': None,\n", + " 'name': 'lan_epoch_Cov',\n", + " 'type': ['double', 'null']},\n", + " {'default': None, 'name': 'aop_M_Cov', 'type': ['double', 'null']},\n", + " {'default': None,\n", + " 'name': 'aop_epoch_Cov',\n", + " 'type': ['double', 'null']},\n", + " {'default': None,\n", + " 'name': 'M_epoch_Cov',\n", + " 'type': ['double', 'null']}],\n", + " 'name': 'oe_Cov',\n", + " 'namespace': 'lsst',\n", + " 'type': 'record'},\n", + " 'null']},\n", + " {'default': None, 'name': 'arc', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'orbFitLnL', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'orbFitChi2', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'orbFitNdata', 'type': ['int', 'null']},\n", + " {'default': None, 'name': 'MOID1', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'MOID2', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'moidLon1', 'type': ['double', 'null']},\n", + " {'default': None, 'name': 'moidLon2', 'type': ['double', 'null']},\n", + " {'default': None, 'name': 'uH', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'uHErr', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'uG1', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'uG1Err', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'uG2', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'uG2Err', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'gH', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'gHErr', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'gG1', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'gG1Err', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'gG2', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'gG2Err', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'rH', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'rHErr', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'rG1', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'rG1Err', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'rG2', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'rG2Err', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'iH', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'iHErr', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'iG1', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'iG1Err', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'iG2', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'iG2Err', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'zH', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'zHErr', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'zG1', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'zG1Err', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'zG2', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'zG2Err', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'yH', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'yHErr', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'yG1', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'yG1Err', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'yG2', 'type': ['float', 'null']},\n", + " {'default': None, 'name': 'yG2Err', 'type': ['float', 'null']},\n", + " {'name': 'flags', 'type': 'long'}],\n", + " 'name': 'ssObject',\n", + " 'namespace': 'lsst',\n", + " 'type': 'record'},\n", + " 'null']},\n", + " {'default': None, 'name': 'diaObjectL2', 'type': ['lsst.diaObject', 'null']},\n", + " {'default': None,\n", + " 'name': 'diaSourcesL2',\n", + " 'type': [{'items': 'lsst.alert.diaSource', 'type': 'array'}, 'null']},\n", + " {'default': None,\n", + " 'name': 'cutoutDifference',\n", + " 'type': [{'fields': [{'name': 'fileName', 'type': 'string'},\n", + " {'name': 'stampData', 'type': 'bytes'}],\n", + " 'name': 'cutout',\n", + " 'namespace': 'lsst.alert',\n", + " 'type': 'record'},\n", + " 'null']},\n", + " {'default': None,\n", + " 'name': 'cutoutTemplate',\n", + " 'type': ['lsst.alert.cutout', 'null']}],\n", + " 'name': 'alert',\n", + " 'namespace': 'lsst',\n", + " 'type': 'record'}" + ] + }, + "execution_count": 7, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "schema" + ] + }, + { + "cell_type": "markdown", + "metadata": { + "collapsed": true, + "deletable": true, + "editable": true + }, + "source": [ + "## Prep Spark environment\n", + "\n", + "Need some packages to talk to Kafka." + ] + }, + { + "cell_type": "code", + "execution_count": 8, + "metadata": { + "collapsed": true, + "deletable": true, + "editable": true + }, + "outputs": [], + "source": [ + "import os\n", + "os.environ['PYSPARK_SUBMIT_ARGS'] = '--packages org.apache.spark:spark-streaming-kafka-0-8_2.11:2.1.0,org.apache.spark:spark-sql-kafka-0-10_2.11:2.1.0,com.databricks:spark-avro_2.11:3.2.0 pyspark-shell'" + ] + }, + { + "cell_type": "code", + "execution_count": 9, + "metadata": { + "collapsed": false, + "deletable": true, + "editable": true + }, + "outputs": [], + "source": [ + "from pyspark import SparkContext\n", + "from pyspark.streaming import StreamingContext\n", + "from pyspark.streaming.kafka import KafkaUtils\n", + "\n", + "# define the update function\n", + "def updateTotalCount(currentCount, countState):\n", + " if countState is None:\n", + " countState = 0\n", + " return sum(currentCount, countState)\n", + "\n", + "# create spark and streaming contexts\n", + "sc = SparkContext(\"local[*]\", \"KafkaDirectStreamAvro\")\n", + "ssc = StreamingContext(sc, 10)\n", + "\n", + "# defining the checkpoint directory\n", + "ssc.checkpoint(\"/tmp\")" + ] + }, + { + "cell_type": "markdown", + "metadata": { + "deletable": true, + "editable": true + }, + "source": [ + "## Start a Kafka stream for Spark to subscribe\n", + "\n", + "No stamps, uses Avro schemaless encoding." + ] + }, + { + "cell_type": "markdown", + "metadata": { + "deletable": true, + "editable": true + }, + "source": [ + "With lsst-dm/alert_stream, in an external shell:\n", + "\n", + "docker run -it --network=alertstream_default alert_stream python bin/sendAlertStream.py my-stream 10 --no-stamps\n", + "\n", + "docker run -it --network=alertstream_default alert_stream python bin/sendAlertStream.py my-stream 10 --no-stamps" + ] + }, + { + "cell_type": "markdown", + "metadata": { + "deletable": true, + "editable": true + }, + "source": [ + "## Create output for Spark to print\n", + "\n", + "kafkaStream is configured with decoding applied to the value directly.\n", + "\n", + "alerts grabs the actual alert messages.\n", + "\n", + "alertIds applies a 'filter' that just grabs individual alertId's.\n", + "\n", + "alertId_counts does a count of the events in alertId_dstream for the configured window (10 seconds).\n" + ] + }, + { + "cell_type": "code", + "execution_count": 10, + "metadata": { + "collapsed": false + }, + "outputs": [], + "source": [ + "import io\n", + "\n", + "def decoder(msg):\n", + " bytes_io = io.BytesIO(msg)\n", + " bytes_io.seek(0)\n", + " alert = fastavro.schemaless_reader(bytes_io, schema)\n", + " return alert" + ] + }, + { + "cell_type": "code", + "execution_count": 11, + "metadata": { + "collapsed": false, + "deletable": true, + "editable": true + }, + "outputs": [], + "source": [ + "kafkaStream = KafkaUtils.createDirectStream(ssc, ['my-stream'], {'bootstrap.servers': 'kafka:9092',\n", + " 'auto.offset.reset': 'smallest', 'group.id': 'spark-group' }, valueDecoder=decoder)\n", + "\n", + "alerts = kafkaStream.map(lambda x: x[1])\n", + "alerts.pprint()" + ] + }, + { + "cell_type": "code", + "execution_count": 12, + "metadata": { + "collapsed": true + }, + "outputs": [], + "source": [ + "def filter_alertId(alert):\n", + " return alert['alertId']" + ] + }, + { + "cell_type": "code", + "execution_count": 13, + "metadata": { + "collapsed": false, + "deletable": true, + "editable": true + }, + "outputs": [], + "source": [ + "alertIds = alerts.map(filter_alertId)\n", + "alertIds.pprint()" + ] + }, + { + "cell_type": "code", + "execution_count": 14, + "metadata": { + "collapsed": true, + "deletable": true, + "editable": true + }, + "outputs": [], + "source": [ + "alertId_counts = alertIds.countByValue()\n", + "alertId_counts.pprint()" + ] + }, + { + "cell_type": "markdown", + "metadata": { + "deletable": true, + "editable": true + }, + "source": [ + "## Start the streaming context\n", + "\n", + "Output pprints of the streams above appear." + ] + }, + { + "cell_type": "code", + "execution_count": 15, + "metadata": { + "collapsed": false, + "deletable": true, + "editable": true + }, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "-------------------------------------------\n", + "Time: 2017-04-20 23:55:00\n", + "-------------------------------------------\n", + "{'cutoutTemplate': None, 'diaObjectL2': {'iFPFluxMeanErr': None, 'uFPFluxSigma': None, 'nearbyObj1Dist': None, 'uPSFluxChi2': None, 'decl': 0.126243049656, 'yFPFluxMeanErr': None, 'zPSFluxChi2': None, 'pmDecl': 0.00014000000373926014, 'yFPFluxMean': None, 'nearbyObj1LnP': None, 'pmParallaxChi2': 0.00013000000035390258, 'pmParallaxLnL': 0.00013000000035390258, 'rFPFluxMeanErr': None, 'yPSFluxMeanErr': None, 'rPSFluxMean': None, 'ra': 351.570546978, 'gFPFluxMean': None, 'gPSFluxNdata': None, 'rPSFluxChi2': None, 'uLcPeriodic': None, 'yPSFluxNdata': None, 'iPSFluxSigma': None, 'zFPFluxMeanErr': None, 'iPSFluxChi2': None, 'rLcPeriodic': None, 'pm_parallax_Cov': {'pmDecl_parallax_Cov': 0.00013000000035390258, 'pmRa_pmDecl_Cov': 0.00013000000035390258, 'pmRa_parallax_Cov': 0.00013000000035390258, 'pmDeclSigma': 0.00013000000035390258, 'parallaxSigma': 0.00013000000035390258, 'pmRaSigma': 0.00013000000035390258}, 'yPSFluxMean': None, 'ra_decl_Cov': {'declSigma': 0.0002800000074785203, 'ra_decl_Cov': 0.0002899999963119626, 'raSigma': 0.0002800000074785203}, 'nearbyObj2Dist': None, 'gPSFluxMean': None, 'uPSFluxMeanErr': None, 'gPSFluxMeanErr': None, 'rPSFluxMeanErr': None, 'zLcPeriodic': None, 'nearbyObj3': None, 'gFPFluxMeanErr': None, 'zPSFluxNdata': None, 'zPSFluxSigma': None, 'iLcPeriodic': None, 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'psNdata': None, 'psFlux': 1241.0, 'ixy': None}], 'l1dbId': 222222222, 'diaObject': {'iFPFluxMeanErr': None, 'uFPFluxSigma': None, 'nearbyObj1Dist': None, 'uPSFluxChi2': None, 'decl': 0.126243049656, 'yFPFluxMeanErr': None, 'zPSFluxChi2': None, 'pmDecl': 0.00014000000373926014, 'yFPFluxMean': None, 'nearbyObj1LnP': None, 'pmParallaxChi2': 0.00013000000035390258, 'pmParallaxLnL': 0.00013000000035390258, 'rFPFluxMeanErr': None, 'yPSFluxMeanErr': None, 'rPSFluxMean': None, 'ra': 351.570546978, 'gFPFluxMean': None, 'gPSFluxNdata': None, 'rPSFluxChi2': None, 'uLcPeriodic': None, 'yPSFluxNdata': None, 'iPSFluxSigma': None, 'zFPFluxMeanErr': None, 'iPSFluxChi2': None, 'rLcPeriodic': None, 'pm_parallax_Cov': {'pmDecl_parallax_Cov': 0.00013000000035390258, 'pmRa_pmDecl_Cov': 0.00013000000035390258, 'pmRa_parallax_Cov': 0.00013000000035390258, 'pmDeclSigma': 0.00013000000035390258, 'parallaxSigma': 0.00013000000035390258, 'pmRaSigma': 0.00013000000035390258}, 'yPSFluxMean': None, 'ra_decl_Cov': {'declSigma': 0.0002800000074785203, 'ra_decl_Cov': 0.0002899999963119626, 'raSigma': 0.0002800000074785203}, 'nearbyObj2Dist': None, 'gPSFluxMean': None, 'uPSFluxMeanErr': None, 'gPSFluxMeanErr': None, 'rPSFluxMeanErr': None, 'zLcPeriodic': None, 'nearbyObj3': None, 'gFPFluxMeanErr': None, 'zPSFluxNdata': None, 'zPSFluxSigma': None, 'iLcPeriodic': None, 'nearbyObj3Dist': None, 'yFPFluxSigma': None, 'uPSFluxNdata': None, 'yPSFluxSigma': None, 'zPSFluxMean': None, 'uPSFluxMean': None, 'zLcNonPeriodic': None, 'radecTai': 1480360995.0, 'uPSFluxSigma': None, 'gPSFluxSigma': None, 'zFPFluxMean': None, 'iPSFluxNdata': None, 'iPSFluxMean': None, 'flags': 0, 'uFPFluxMeanErr': None, 'yLcPeriodic': None, 'iPSFluxMeanErr': None, 'rLcNonPeriodic': None, 'uLcNonPeriodic': None, 'nearbyObj2': None, 'rPSFluxNdata': None, 'gLcNonPeriodic': None, 'pmRa': 0.00013000000035390258, 'nearbyObj3LnP': None, 'pmParallaxNdata': 1214, 'nearbyObj2LnP': None, 'rPSFluxSigma': None, 'gLcPeriodic': None, 'diaObjectId': 281323062375219201, 'gFPFluxSigma': None, 'nearbyObj1': None, 'rFPFluxSigma': None, 'rFPFluxMean': None, 'zPSFluxMeanErr': None, 'iLcNonPeriodic': None, 'uFPFluxMean': None, 'zFPFluxSigma': None, 'iFPFluxMean': None, 'iFPFluxSigma': None, 'yPSFluxChi2': None, 'yLcNonPeriodic': None, 'parallax': 2.124124050140381, 'gPSFluxChi2': None}}\n", + "\n", + "-------------------------------------------\n", + "Time: 2017-04-20 23:55:10\n", + "-------------------------------------------\n", + "1231321321\n", + "1231321321\n", + "1231321321\n", + "1231321321\n", + "1231321321\n", + "1231321321\n", + "1231321321\n", + "1231321321\n", + "1231321321\n", + "1231321321\n", + "\n", + "-------------------------------------------\n", + "Time: 2017-04-20 23:55:10\n", + "-------------------------------------------\n", + "(1231321321, 10)\n", + "\n", + "-------------------------------------------\n", + "Time: 2017-04-20 23:55:20\n", + "-------------------------------------------\n", + "\n", + "-------------------------------------------\n", + "Time: 2017-04-20 23:55:20\n", + "-------------------------------------------\n", + "\n", + "-------------------------------------------\n", + "Time: 2017-04-20 23:55:20\n", + "-------------------------------------------\n", + "\n" + ] + }, + { + "ename": "KeyboardInterrupt", + "evalue": "", + "output_type": "error", + "traceback": [ + "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m", + "\u001b[0;31mKeyboardInterrupt\u001b[0m Traceback (most recent call last)", + "\u001b[0;32m\u001b[0m in \u001b[0;36m\u001b[0;34m()\u001b[0m\n\u001b[1;32m 1\u001b[0m \u001b[0mssc\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mstart\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m----> 2\u001b[0;31m \u001b[0mssc\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mawaitTermination\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m", + "\u001b[0;32m/usr/local/spark/python/pyspark/streaming/context.py\u001b[0m in \u001b[0;36mawaitTermination\u001b[0;34m(self, timeout)\u001b[0m\n\u001b[1;32m 204\u001b[0m \"\"\"\n\u001b[1;32m 205\u001b[0m \u001b[0;32mif\u001b[0m \u001b[0mtimeout\u001b[0m \u001b[0;32mis\u001b[0m \u001b[0;32mNone\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 206\u001b[0;31m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_jssc\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mawaitTermination\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 207\u001b[0m \u001b[0;32melse\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 208\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_jssc\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mawaitTerminationOrTimeout\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mint\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mtimeout\u001b[0m \u001b[0;34m*\u001b[0m \u001b[0;36m1000\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n", + "\u001b[0;32m/usr/local/spark/python/lib/py4j-0.10.4-src.zip/py4j/java_gateway.py\u001b[0m in \u001b[0;36m__call__\u001b[0;34m(self, *args)\u001b[0m\n\u001b[1;32m 1129\u001b[0m \u001b[0mproto\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mEND_COMMAND_PART\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 1130\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m-> 1131\u001b[0;31m \u001b[0manswer\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mgateway_client\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0msend_command\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mcommand\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 1132\u001b[0m return_value = get_return_value(\n\u001b[1;32m 1133\u001b[0m answer, self.gateway_client, self.target_id, self.name)\n", + "\u001b[0;32m/usr/local/spark/python/lib/py4j-0.10.4-src.zip/py4j/java_gateway.py\u001b[0m in \u001b[0;36msend_command\u001b[0;34m(self, command, retry, binary)\u001b[0m\n\u001b[1;32m 881\u001b[0m \u001b[0mconnection\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_get_connection\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 882\u001b[0m \u001b[0;32mtry\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 883\u001b[0;31m \u001b[0mresponse\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mconnection\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0msend_command\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mcommand\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 884\u001b[0m \u001b[0;32mif\u001b[0m \u001b[0mbinary\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 885\u001b[0m \u001b[0;32mreturn\u001b[0m \u001b[0mresponse\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_create_connection_guard\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mconnection\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n", + "\u001b[0;32m/usr/local/spark/python/lib/py4j-0.10.4-src.zip/py4j/java_gateway.py\u001b[0m in \u001b[0;36msend_command\u001b[0;34m(self, command)\u001b[0m\n\u001b[1;32m 1026\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 1027\u001b[0m \u001b[0;32mtry\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m-> 1028\u001b[0;31m \u001b[0manswer\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0msmart_decode\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mstream\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mreadline\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m-\u001b[0m\u001b[0;36m1\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 1029\u001b[0m \u001b[0mlogger\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mdebug\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m\"Answer received: {0}\"\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mformat\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0manswer\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 1030\u001b[0m \u001b[0;32mif\u001b[0m \u001b[0manswer\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mstartswith\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mproto\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mRETURN_MESSAGE\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n", + "\u001b[0;32m/opt/conda/lib/python3.5/socket.py\u001b[0m in \u001b[0;36mreadinto\u001b[0;34m(self, b)\u001b[0m\n\u001b[1;32m 573\u001b[0m \u001b[0;32mwhile\u001b[0m \u001b[0;32mTrue\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 574\u001b[0m \u001b[0;32mtry\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 575\u001b[0;31m \u001b[0;32mreturn\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_sock\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mrecv_into\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mb\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 576\u001b[0m \u001b[0;32mexcept\u001b[0m \u001b[0mtimeout\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 577\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_timeout_occurred\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0;32mTrue\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n", + "\u001b[0;31mKeyboardInterrupt\u001b[0m: " + ] + } + ], + "source": [ + "ssc.start()\n", + "ssc.awaitTermination()" + ] + }, + { + "cell_type": "code", + "execution_count": 16, + "metadata": { + "collapsed": false, + "deletable": true, + "editable": true + }, + "outputs": [], + "source": [ + "sc.stop()" + ] + }, + { + "cell_type": "code", + "execution_count": 17, + "metadata": { + "collapsed": false, + "deletable": true, + "editable": true + }, + "outputs": [], + "source": [ + "ssc.stop()" + ] + } + ], + "metadata": { + "kernelspec": { + "display_name": "Python 3", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.5.2" + } + }, + "nbformat": 4, + "nbformat_minor": 2 +} diff --git a/notebooks/01-spark-streaming-kafka.ipynb b/notebooks/01-spark-streaming-kafka.ipynb new file mode 100644 index 0000000..0dfd3b5 --- /dev/null +++ b/notebooks/01-spark-streaming-kafka.ipynb @@ -0,0 +1,404 @@ +{ + "cells": [ + { + "cell_type": "markdown", + "metadata": { + "deletable": true, + "editable": true + }, + "source": [ + "# Spark Streaming from Kafka\n", + "\n", + "Example of using Spark to connect to Kafka and using Spark Streaming to process a Kafka stream of Python 'dict' objects." + ] + }, + { + "cell_type": "markdown", + "metadata": { + "deletable": true, + "editable": true + }, + "source": [ + "## Notes\n", + "\n", + "Useful references.\n", + "\n", + "https://www.rittmanmead.com/blog/2017/01/getting-started-with-spark-streaming-with-python-and-kafka/\n", + "\n", + "https://spark.apache.org/docs/2.1.0/streaming-kafka-0-8-integration.html\n" + ] + }, + { + "cell_type": "markdown", + "metadata": { + "collapsed": true, + "deletable": true, + "editable": true + }, + "source": [ + "## Prep environment\n", + "\n", + "Need some packages to talk to Kafka." + ] + }, + { + "cell_type": "code", + "execution_count": 1, + "metadata": { + "collapsed": true, + "deletable": true, + "editable": true + }, + "outputs": [], + "source": [ + "import os\n", + "os.environ['PYSPARK_SUBMIT_ARGS'] = '--packages org.apache.spark:spark-streaming-kafka-0-8_2.11:2.1.0,org.apache.spark:spark-sql-kafka-0-10_2.11:2.1.0,com.databricks:spark-avro_2.11:3.2.0 pyspark-shell'\n" + ] + }, + { + "cell_type": "code", + "execution_count": 2, + "metadata": { + "collapsed": true, + "deletable": true, + "editable": true + }, + "outputs": [], + "source": [ + "from ast import literal_eval" + ] + }, + { + "cell_type": "code", + "execution_count": 3, + "metadata": { + "collapsed": false, + "deletable": true, + "editable": true + }, + "outputs": [], + "source": [ + "from pyspark import SparkContext\n", + "from pyspark.streaming import StreamingContext\n", + "from pyspark.streaming.kafka import KafkaUtils\n", + "\n", + "# define the update function\n", + "def updateTotalCount(currentCount, countState):\n", + " if countState is None:\n", + " countState = 0\n", + " return sum(currentCount, countState)\n", + "\n", + "# create spark and streaming contexts\n", + "sc = SparkContext(\"local[*]\", \"KafkaDirectStream\")\n", + "ssc = StreamingContext(sc, 10)\n", + "\n", + "# defining the checkpoint directory\n", + "ssc.checkpoint(\"/tmp\")" + ] + }, + { + "cell_type": "markdown", + "metadata": { + "deletable": true, + "editable": true + }, + "source": [ + "## Start a Kafka stream for Spark to subscribe" + ] + }, + { + "cell_type": "markdown", + "metadata": { + "deletable": true, + "editable": true + }, + "source": [ + "With lsst-dm/alert_stream, in an external shell:\n", + "\n", + "docker run -it --network=alertstream_default alert_stream python bin/sendAlertStream.py my-stream 10 --no-stamps --encode-off\n", + "\n", + "docker run -it --network=alertstream_default alert_stream python bin/sendAlertStream.py my-stream 10 --no-stamps --encode-off" + ] + }, + { + "cell_type": "markdown", + "metadata": { + "deletable": true, + "editable": true + }, + "source": [ + "## Create output for Spark to print\n", + "\n", + "kafkaStream is the raw dstream of Spark tuples.\n", + "\n", + "alert_dstream applies a 'filter' that converts to the raw alert stream.\n", + "\n", + "alertId_dstream applies a 'filter' that just grabs alertId's.\n", + "\n", + "alertId_counts does a count of the events in alertId_dstream for the configured window (10 seconds).\n" + ] + }, + { + "cell_type": "code", + "execution_count": 4, + "metadata": { + "collapsed": false, + "deletable": true, + "editable": true + }, + "outputs": [], + "source": [ + "kafkaStream = KafkaUtils.createDirectStream(ssc, ['my-stream'], {'bootstrap.servers': 'kafka:9092',\n", + " 'auto.offset.reset': 'smallest', 'group.id': 'spark-group' }) \n", + "\n", + "kafkaStream.pprint()" + ] + }, + { + "cell_type": "code", + "execution_count": 5, + "metadata": { + "collapsed": false, + "deletable": true, + "editable": true + }, + "outputs": [], + "source": [ + "alert_dstream = kafkaStream.map(lambda alert: literal_eval(alert[1]))\n", + "alert_dstream.pprint()" + ] + }, + { + "cell_type": "code", + "execution_count": 6, + "metadata": { + "collapsed": true, + "deletable": true, + "editable": true + }, + "outputs": [], + "source": [ + "def filter_alertId(alert):\n", + " return alert['alertId']" + ] + }, + { + "cell_type": "code", + "execution_count": 7, + "metadata": { + "collapsed": true, + "deletable": true, + "editable": true + }, + "outputs": [], + "source": [ + "alertId_dstream = alert_dstream.map(filter_alertId)\n", + "alertId_dstream.pprint()" + ] + }, + { + "cell_type": "code", + "execution_count": 8, + "metadata": { + "collapsed": true, + "deletable": true, + "editable": true + }, + "outputs": [], + "source": [ + "alertId_counts = alertId_dstream.countByValue()\n", + "alertId_counts.pprint()" + ] + }, + { + "cell_type": "markdown", + "metadata": { + "deletable": true, + "editable": true + }, + "source": [ + "## Start the streaming context\n", + "\n", + "Output pprints of the streams above appear." + ] + }, + { + "cell_type": "code", + "execution_count": 9, + "metadata": { + "collapsed": false, + "deletable": true, + "editable": true + }, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "-------------------------------------------\n", + "Time: 2017-04-20 23:59:10\n", + "-------------------------------------------\n", + "(None, \"{'alertId': 1231321321, 'l1dbId': 222222222, 'diaSource': {'diaSourceId': 281323062375219200, 'ccdVisitId': 111111, 'midPointTai': 1480360995, 'filterName': 'r', 'ra': 351.570546978, 'decl': 0.126243049656, 'ra_decl_Cov': 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"-------------------------------------------\n", + "1231321321\n", + "1231321321\n", + "1231321321\n", + "1231321321\n", + "1231321321\n", + "1231321321\n", + "1231321321\n", + "1231321321\n", + "1231321321\n", + "1231321321\n", + "\n", + "-------------------------------------------\n", + "Time: 2017-04-20 23:59:10\n", + "-------------------------------------------\n", + "(1231321321, 10)\n", + "\n", + "-------------------------------------------\n", + "Time: 2017-04-20 23:59:20\n", + "-------------------------------------------\n", + "(None, \"{'alertId': 1231321321, 'l1dbId': 222222222, 'diaSource': {'diaSourceId': 281323062375219200, 'ccdVisitId': 111111, 'midPointTai': 1480360995, 'filterName': 'r', 'ra': 351.570546978, 'decl': 0.126243049656, 'ra_decl_Cov': {'raSigma': 0.00028, 'declSigma': 0.00028, 'ra_decl_Cov': 0.00029}, 'x': 112.1, 'y': 121.1, 'x_y_Cov': {'xSigma': 1.2, 'ySigma': 1.1, 'x_y_Cov': 1.2}, 'snr': 41.1, 'psFlux': 1241.0, 'flags': 0}, 'prv_diaSources': 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2.124124}, 'diaSourcesL2': [{'diaSourceId': 281323062375219198, 'psFlux': 1241.0, 'ra': 351.570546978, 'x_y_Cov': {'x_y_Cov': 1.2, 'xSigma': 1.2, 'ySigma': 1.1}, 'decl': 0.126243049656, 'x': 112.1, 'y': 121.1, 'midPointTai': 1480360995, 'filterName': 'r', 'flags': 0, 'ccdVisitId': 111111, 'snr': 41.1, 'ra_decl_Cov': {'ra_decl_Cov': 0.00029, 'declSigma': 0.00028, 'raSigma': 0.00028}}, {'diaSourceId': 281323062375219199, 'psFlux': 1241.0, 'ra': 351.570546978, 'x_y_Cov': {'x_y_Cov': 1.2, 'xSigma': 1.2, 'ySigma': 1.1}, 'decl': 0.126243049656, 'x': 112.1, 'y': 121.1, 'midPointTai': 1480360995, 'filterName': 'r', 'flags': 0, 'ccdVisitId': 111111, 'snr': 41.1, 'ra_decl_Cov': {'ra_decl_Cov': 0.00029, 'declSigma': 0.00028, 'raSigma': 0.00028}}]}\n", + "{'alertId': 1231321321, 'l1dbId': 222222222, 'prv_diaSources': [{'diaSourceId': 281323062375219198, 'psFlux': 1241.0, 'ra': 351.570546978, 'x_y_Cov': {'x_y_Cov': 1.2, 'xSigma': 1.2, 'ySigma': 1.1}, 'decl': 0.126243049656, 'x': 112.1, 'y': 121.1, 'midPointTai': 1480360995, 'filterName': 'r', 'flags': 0, 'ccdVisitId': 111111, 'snr': 41.1, 'ra_decl_Cov': {'ra_decl_Cov': 0.00029, 'declSigma': 0.00028, 'raSigma': 0.00028}}, {'diaSourceId': 281323062375219199, 'psFlux': 1241.0, 'ra': 351.570546978, 'x_y_Cov': {'x_y_Cov': 1.2, 'xSigma': 1.2, 'ySigma': 1.1}, 'decl': 0.126243049656, 'x': 112.1, 'y': 121.1, 'midPointTai': 1480360995, 'filterName': 'r', 'flags': 0, 'ccdVisitId': 111111, 'snr': 41.1, 'ra_decl_Cov': {'ra_decl_Cov': 0.00029, 'declSigma': 0.00028, 'raSigma': 0.00028}}], 'diaObjectL2': {'diaObjectId': 281323062375219201, 'pmParallaxNdata': 1214, 'ra_decl_Cov': {'ra_decl_Cov': 0.00029, 'declSigma': 0.00028, 'raSigma': 0.00028}, 'pmRa': 0.00013, 'pmDecl': 0.00014, 'pmParallaxChi2': 0.00013, 'ra': 351.570546978, 'radecTai': 1480360995, 'pmParallaxLnL': 0.00013, 'decl': 0.126243049656, 'flags': 0, 'pm_parallax_Cov': {'parallaxSigma': 0.00013, 'pmRaSigma': 0.00013, 'pmRa_parallax_Cov': 0.00013, 'pmDeclSigma': 0.00013, 'pmRa_pmDecl_Cov': 0.00013, 'pmDecl_parallax_Cov': 0.00013}, 'parallax': 2.124124}, 'ssObject': {'orbFitLnL': 1343141.0341, 'uHErr': 13213.213, 'MOID2': 23432.423, 'ssObjectId': 5364546, 'orbFitChi2': 1341421.2414, 'moidLon1': 2143.213, 'orbFitNdata': 1214, 'uG1Err': 31232.2132, 'uG2Err': 23132.231, 'uG1': 32131.312, 'oe': {'epoch': 134141, 'lan': 54325.34, 'i': 5436.2344, 'aop': 344243.3, 'e': 636.121, 'M': 131.1241, 'q': 6654.14}, 'arc': 2.124124, 'MOID1': 3141.0, 'uH': 13231.231, 'uG2': 231.2313, 'flags': 0, 'moidLon2': 3142.23123}, 'diaSource': {'diaSourceId': 281323062375219200, 'psFlux': 1241.0, 'ra': 351.570546978, 'x_y_Cov': {'x_y_Cov': 1.2, 'xSigma': 1.2, 'ySigma': 1.1}, 'decl': 0.126243049656, 'x': 112.1, 'y': 121.1, 'midPointTai': 1480360995, 'filterName': 'r', 'flags': 0, 'ccdVisitId': 111111, 'snr': 41.1, 'ra_decl_Cov': {'ra_decl_Cov': 0.00029, 'declSigma': 0.00028, 'raSigma': 0.00028}}, 'diaObject': {'diaObjectId': 281323062375219201, 'pmParallaxNdata': 1214, 'ra_decl_Cov': {'ra_decl_Cov': 0.00029, 'declSigma': 0.00028, 'raSigma': 0.00028}, 'pmRa': 0.00013, 'pmDecl': 0.00014, 'pmParallaxChi2': 0.00013, 'ra': 351.570546978, 'radecTai': 1480360995, 'pmParallaxLnL': 0.00013, 'decl': 0.126243049656, 'flags': 0, 'pm_parallax_Cov': {'parallaxSigma': 0.00013, 'pmRaSigma': 0.00013, 'pmRa_parallax_Cov': 0.00013, 'pmDeclSigma': 0.00013, 'pmRa_pmDecl_Cov': 0.00013, 'pmDecl_parallax_Cov': 0.00013}, 'parallax': 2.124124}, 'diaSourcesL2': [{'diaSourceId': 281323062375219198, 'psFlux': 1241.0, 'ra': 351.570546978, 'x_y_Cov': {'x_y_Cov': 1.2, 'xSigma': 1.2, 'ySigma': 1.1}, 'decl': 0.126243049656, 'x': 112.1, 'y': 121.1, 'midPointTai': 1480360995, 'filterName': 'r', 'flags': 0, 'ccdVisitId': 111111, 'snr': 41.1, 'ra_decl_Cov': {'ra_decl_Cov': 0.00029, 'declSigma': 0.00028, 'raSigma': 0.00028}}, {'diaSourceId': 281323062375219199, 'psFlux': 1241.0, 'ra': 351.570546978, 'x_y_Cov': {'x_y_Cov': 1.2, 'xSigma': 1.2, 'ySigma': 1.1}, 'decl': 0.126243049656, 'x': 112.1, 'y': 121.1, 'midPointTai': 1480360995, 'filterName': 'r', 'flags': 0, 'ccdVisitId': 111111, 'snr': 41.1, 'ra_decl_Cov': {'ra_decl_Cov': 0.00029, 'declSigma': 0.00028, 'raSigma': 0.00028}}]}\n", + "{'alertId': 1231321321, 'l1dbId': 222222222, 'prv_diaSources': [{'diaSourceId': 281323062375219198, 'psFlux': 1241.0, 'ra': 351.570546978, 'x_y_Cov': {'x_y_Cov': 1.2, 'xSigma': 1.2, 'ySigma': 1.1}, 'decl': 0.126243049656, 'x': 112.1, 'y': 121.1, 'midPointTai': 1480360995, 'filterName': 'r', 'flags': 0, 'ccdVisitId': 111111, 'snr': 41.1, 'ra_decl_Cov': {'ra_decl_Cov': 0.00029, 'declSigma': 0.00028, 'raSigma': 0.00028}}, {'diaSourceId': 281323062375219199, 'psFlux': 1241.0, 'ra': 351.570546978, 'x_y_Cov': {'x_y_Cov': 1.2, 'xSigma': 1.2, 'ySigma': 1.1}, 'decl': 0.126243049656, 'x': 112.1, 'y': 121.1, 'midPointTai': 1480360995, 'filterName': 'r', 'flags': 0, 'ccdVisitId': 111111, 'snr': 41.1, 'ra_decl_Cov': {'ra_decl_Cov': 0.00029, 'declSigma': 0.00028, 'raSigma': 0.00028}}], 'diaObjectL2': {'diaObjectId': 281323062375219201, 'pmParallaxNdata': 1214, 'ra_decl_Cov': {'ra_decl_Cov': 0.00029, 'declSigma': 0.00028, 'raSigma': 0.00028}, 'pmRa': 0.00013, 'pmDecl': 0.00014, 'pmParallaxChi2': 0.00013, 'ra': 351.570546978, 'radecTai': 1480360995, 'pmParallaxLnL': 0.00013, 'decl': 0.126243049656, 'flags': 0, 'pm_parallax_Cov': {'parallaxSigma': 0.00013, 'pmRaSigma': 0.00013, 'pmRa_parallax_Cov': 0.00013, 'pmDeclSigma': 0.00013, 'pmRa_pmDecl_Cov': 0.00013, 'pmDecl_parallax_Cov': 0.00013}, 'parallax': 2.124124}, 'ssObject': {'orbFitLnL': 1343141.0341, 'uHErr': 13213.213, 'MOID2': 23432.423, 'ssObjectId': 5364546, 'orbFitChi2': 1341421.2414, 'moidLon1': 2143.213, 'orbFitNdata': 1214, 'uG1Err': 31232.2132, 'uG2Err': 23132.231, 'uG1': 32131.312, 'oe': {'epoch': 134141, 'lan': 54325.34, 'i': 5436.2344, 'aop': 344243.3, 'e': 636.121, 'M': 131.1241, 'q': 6654.14}, 'arc': 2.124124, 'MOID1': 3141.0, 'uH': 13231.231, 'uG2': 231.2313, 'flags': 0, 'moidLon2': 3142.23123}, 'diaSource': {'diaSourceId': 281323062375219200, 'psFlux': 1241.0, 'ra': 351.570546978, 'x_y_Cov': {'x_y_Cov': 1.2, 'xSigma': 1.2, 'ySigma': 1.1}, 'decl': 0.126243049656, 'x': 112.1, 'y': 121.1, 'midPointTai': 1480360995, 'filterName': 'r', 'flags': 0, 'ccdVisitId': 111111, 'snr': 41.1, 'ra_decl_Cov': {'ra_decl_Cov': 0.00029, 'declSigma': 0.00028, 'raSigma': 0.00028}}, 'diaObject': {'diaObjectId': 281323062375219201, 'pmParallaxNdata': 1214, 'ra_decl_Cov': {'ra_decl_Cov': 0.00029, 'declSigma': 0.00028, 'raSigma': 0.00028}, 'pmRa': 0.00013, 'pmDecl': 0.00014, 'pmParallaxChi2': 0.00013, 'ra': 351.570546978, 'radecTai': 1480360995, 'pmParallaxLnL': 0.00013, 'decl': 0.126243049656, 'flags': 0, 'pm_parallax_Cov': {'parallaxSigma': 0.00013, 'pmRaSigma': 0.00013, 'pmRa_parallax_Cov': 0.00013, 'pmDeclSigma': 0.00013, 'pmRa_pmDecl_Cov': 0.00013, 'pmDecl_parallax_Cov': 0.00013}, 'parallax': 2.124124}, 'diaSourcesL2': [{'diaSourceId': 281323062375219198, 'psFlux': 1241.0, 'ra': 351.570546978, 'x_y_Cov': {'x_y_Cov': 1.2, 'xSigma': 1.2, 'ySigma': 1.1}, 'decl': 0.126243049656, 'x': 112.1, 'y': 121.1, 'midPointTai': 1480360995, 'filterName': 'r', 'flags': 0, 'ccdVisitId': 111111, 'snr': 41.1, 'ra_decl_Cov': {'ra_decl_Cov': 0.00029, 'declSigma': 0.00028, 'raSigma': 0.00028}}, {'diaSourceId': 281323062375219199, 'psFlux': 1241.0, 'ra': 351.570546978, 'x_y_Cov': {'x_y_Cov': 1.2, 'xSigma': 1.2, 'ySigma': 1.1}, 'decl': 0.126243049656, 'x': 112.1, 'y': 121.1, 'midPointTai': 1480360995, 'filterName': 'r', 'flags': 0, 'ccdVisitId': 111111, 'snr': 41.1, 'ra_decl_Cov': {'ra_decl_Cov': 0.00029, 'declSigma': 0.00028, 'raSigma': 0.00028}}]}\n", + "\n", + "-------------------------------------------\n", + "Time: 2017-04-20 23:59:20\n", + "-------------------------------------------\n", + "1231321321\n", + "1231321321\n", + "1231321321\n", + "1231321321\n", + "1231321321\n", + "1231321321\n", + "1231321321\n", + "1231321321\n", + "1231321321\n", + "1231321321\n", + "\n", + "-------------------------------------------\n", + "Time: 2017-04-20 23:59:20\n", + "-------------------------------------------\n", + "(1231321321, 10)\n", + "\n" + ] + }, + { + "ename": "KeyboardInterrupt", + "evalue": "", + "output_type": "error", + "traceback": [ + "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m", + "\u001b[0;31mKeyboardInterrupt\u001b[0m Traceback (most recent call last)", + "\u001b[0;32m\u001b[0m in \u001b[0;36m\u001b[0;34m()\u001b[0m\n\u001b[1;32m 1\u001b[0m \u001b[0mssc\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mstart\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m----> 2\u001b[0;31m \u001b[0mssc\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mawaitTermination\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m", + "\u001b[0;32m/usr/local/spark/python/pyspark/streaming/context.py\u001b[0m in \u001b[0;36mawaitTermination\u001b[0;34m(self, timeout)\u001b[0m\n\u001b[1;32m 204\u001b[0m \"\"\"\n\u001b[1;32m 205\u001b[0m \u001b[0;32mif\u001b[0m \u001b[0mtimeout\u001b[0m \u001b[0;32mis\u001b[0m \u001b[0;32mNone\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 206\u001b[0;31m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_jssc\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mawaitTermination\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 207\u001b[0m \u001b[0;32melse\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 208\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_jssc\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mawaitTerminationOrTimeout\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mint\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mtimeout\u001b[0m \u001b[0;34m*\u001b[0m \u001b[0;36m1000\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n", + "\u001b[0;32m/usr/local/spark/python/lib/py4j-0.10.4-src.zip/py4j/java_gateway.py\u001b[0m in \u001b[0;36m__call__\u001b[0;34m(self, *args)\u001b[0m\n\u001b[1;32m 1129\u001b[0m \u001b[0mproto\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mEND_COMMAND_PART\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 1130\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m-> 1131\u001b[0;31m \u001b[0manswer\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mgateway_client\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0msend_command\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mcommand\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 1132\u001b[0m return_value = get_return_value(\n\u001b[1;32m 1133\u001b[0m answer, self.gateway_client, self.target_id, self.name)\n", + "\u001b[0;32m/usr/local/spark/python/lib/py4j-0.10.4-src.zip/py4j/java_gateway.py\u001b[0m in \u001b[0;36msend_command\u001b[0;34m(self, command, retry, binary)\u001b[0m\n\u001b[1;32m 881\u001b[0m \u001b[0mconnection\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_get_connection\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 882\u001b[0m \u001b[0;32mtry\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 883\u001b[0;31m \u001b[0mresponse\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mconnection\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0msend_command\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mcommand\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 884\u001b[0m \u001b[0;32mif\u001b[0m \u001b[0mbinary\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 885\u001b[0m \u001b[0;32mreturn\u001b[0m \u001b[0mresponse\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_create_connection_guard\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mconnection\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n", + "\u001b[0;32m/usr/local/spark/python/lib/py4j-0.10.4-src.zip/py4j/java_gateway.py\u001b[0m in \u001b[0;36msend_command\u001b[0;34m(self, command)\u001b[0m\n\u001b[1;32m 1026\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 1027\u001b[0m \u001b[0;32mtry\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m-> 1028\u001b[0;31m \u001b[0manswer\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0msmart_decode\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mstream\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mreadline\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m-\u001b[0m\u001b[0;36m1\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 1029\u001b[0m \u001b[0mlogger\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mdebug\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m\"Answer received: {0}\"\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mformat\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0manswer\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 1030\u001b[0m \u001b[0;32mif\u001b[0m \u001b[0manswer\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mstartswith\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mproto\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mRETURN_MESSAGE\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n", + "\u001b[0;32m/opt/conda/lib/python3.5/socket.py\u001b[0m in \u001b[0;36mreadinto\u001b[0;34m(self, b)\u001b[0m\n\u001b[1;32m 573\u001b[0m \u001b[0;32mwhile\u001b[0m \u001b[0;32mTrue\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 574\u001b[0m \u001b[0;32mtry\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 575\u001b[0;31m \u001b[0;32mreturn\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_sock\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mrecv_into\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mb\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 576\u001b[0m \u001b[0;32mexcept\u001b[0m \u001b[0mtimeout\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 577\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_timeout_occurred\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0;32mTrue\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n", + "\u001b[0;31mKeyboardInterrupt\u001b[0m: " + ] + } + ], + "source": [ + "ssc.start()\n", + "ssc.awaitTermination()" + ] + }, + { + "cell_type": "code", + "execution_count": 10, + "metadata": { + "collapsed": false, + "deletable": true, + "editable": true + }, + "outputs": [], + "source": [ + "sc.stop()" + ] + }, + { + "cell_type": "code", + "execution_count": 11, + "metadata": { + "collapsed": false, + "deletable": true, + "editable": true + }, + "outputs": [], + "source": [ + "ssc.stop()" + ] + } + ], + "metadata": { + "kernelspec": { + "display_name": "Python 3", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.5.2" + } + }, + "nbformat": 4, + "nbformat_minor": 2 +} diff --git a/notebooks/html/01-spark-streaming-kafka-avro.html b/notebooks/html/01-spark-streaming-kafka-avro.html new file mode 100644 index 0000000..41ed8d1 --- /dev/null +++ b/notebooks/html/01-spark-streaming-kafka-avro.html @@ -0,0 +1,13783 @@ + + + +01-spark-streaming-kafka-avro + + + + + + + + + + + + + + + + + + + +
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Spark Streaming from Kafka with Avro formatted data

Example of using Spark to connect to Kafka and using Spark Streaming to process a Kafka stream of Avro (schemaless) objects.

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Set up schemas for decoding

Schemas are pulled automatically from Github during Docker build.

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In [1]:
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!ls ../../sample-avro-alert/schema
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alert.avsc   diaobject.avsc  simple.avsc
+cutout.avsc  diasource.avsc  ssobject.avsc
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In [2]:
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schema_files = ["../../sample-avro-alert/schema/diasource.avsc",
+                    "../../sample-avro-alert/schema/diaobject.avsc",
+                    "../../sample-avro-alert/schema/ssobject.avsc",
+                    "../../sample-avro-alert/schema/cutout.avsc",
+                    "../../sample-avro-alert/schema/alert.avsc"]
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In [3]:
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import fastavro
+import avro.schema
+import json
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In [4]:
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def loadSingleAvsc(file_path, names):
+    """Load a single avsc file.
+    """
+    with open(file_path) as file_text:
+        json_data = json.load(file_text)
+    schema = avro.schema.SchemaFromJSONData(json_data, names)
+    return schema
+
+ +
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+ +
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In [5]:
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def combineSchemas(schema_files):
+    """Combine multiple nested schemas into a single schema.
+    """
+    known_schemas = avro.schema.Names()
+
+    for s in schema_files:
+        schema = loadSingleAvsc(s, known_schemas)
+    return schema.to_json()
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In [6]:
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schema = combineSchemas(schema_files)
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In [7]:
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schema
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Out[7]:
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{'doc': 'sample avro alert schema v1.0',
+ 'fields': [{'doc': 'add descriptions like this',
+   'name': 'alertId',
+   'type': 'long'},
+  {'name': 'l1dbId', 'type': 'long'},
+  {'name': 'diaSource',
+   'type': {'fields': [{'name': 'diaSourceId', 'type': 'long'},
+     {'name': 'ccdVisitId', 'type': 'long'},
+     {'default': None, 'name': 'diaObjectId', 'type': ['long', 'null']},
+     {'default': None, 'name': 'ssObjectId', 'type': ['long', 'null']},
+     {'default': None, 'name': 'parentDiaSourceId', 'type': ['long', 'null']},
+     {'name': 'midPointTai', 'type': 'double'},
+     {'name': 'filterName', 'type': 'string'},
+     {'name': 'ra', 'type': 'double'},
+     {'name': 'decl', 'type': 'double'},
+     {'name': 'ra_decl_Cov',
+      'type': [{'fields': [{'name': 'raSigma', 'type': 'float'},
+         {'name': 'declSigma', 'type': 'float'},
+         {'name': 'ra_decl_Cov', 'type': 'float'}],
+        'name': 'ra_decl_Cov',
+        'namespace': 'lsst.alert',
+        'type': 'record'}]},
+     {'name': 'x', 'type': 'float'},
+     {'name': 'y', 'type': 'float'},
+     {'name': 'x_y_Cov',
+      'type': [{'fields': [{'name': 'xSigma', 'type': 'float'},
+         {'name': 'ySigma', 'type': 'float'},
+         {'name': 'x_y_Cov', 'type': 'float'}],
+        'name': 'x_y_Cov',
+        'namespace': 'lsst.alert',
+        'type': 'record'}]},
+     {'default': None,
+      'name': 'apFlux',
+      'type': [{'fields': [{'aliases': ['base_CircularApertureFlux_3_0_flux'],
+          'default': None,
+          'name': 'apMeanSb01',
+          'type': ['float', 'null']},
+         {'aliases': ['base_CircularApertureFlux_4_5_flux'],
+          'default': None,
+          'name': 'apMeanSb02',
+          'type': ['float', 'null']},
+         {'aliases': ['base_CircularApertureFlux_6_0_flux'],
+          'default': None,
+          'name': 'apMeanSb03',
+          'type': ['float', 'null']},
+         {'aliases': ['base_CircularApertureFlux_9_0_flux'],
+          'default': None,
+          'name': 'apMeanSb04',
+          'type': ['float', 'null']},
+         {'aliases': ['base_CircularApertureFlux_12_0_flux'],
+          'default': None,
+          'name': 'apMeanSb05',
+          'type': ['float', 'null']},
+         {'aliases': ['base_CircularApertureFlux_17_0_flux'],
+          'default': None,
+          'name': 'apMeanSb06',
+          'type': ['float', 'null']},
+         {'aliases': ['base_CircularApertureFlux_25_0_flux'],
+          'default': None,
+          'name': 'apMeanSb07',
+          'type': ['float', 'null']},
+         {'aliases': ['base_CircularApertureFlux_35_0_flux'],
+          'default': None,
+          'name': 'apMeanSb08',
+          'type': ['float', 'null']},
+         {'aliases': ['base_CircularApertureFlux_50_0_flux'],
+          'default': None,
+          'name': 'apMeanSb09',
+          'type': ['float', 'null']},
+         {'aliases': ['base_CircularApertureFlux_70_0_flux'],
+          'default': None,
+          'name': 'apMeanSb10',
+          'type': ['float', 'null']}],
+        'name': 'apFlux',
+        'namespace': 'lsst.alert',
+        'type': 'record'},
+       'null']},
+     {'default': None,
+      'name': 'apFluxErr',
+      'type': [{'fields': [{'aliases': ['base_CircularApertureFlux_3_0_fluxSigma'],
+          'default': None,
+          'name': 'apMeanSb01Err',
+          'type': ['float', 'null']},
+         {'aliases': ['base_CircularApertureFlux_4_5_fluxSigma'],
+          'default': None,
+          'name': 'apMeanSb02Err',
+          'type': ['float', 'null']},
+         {'aliases': ['base_CircularApertureFlux_6_0_fluxSigma'],
+          'default': None,
+          'name': 'apMeanSb03Err',
+          'type': ['float', 'null']},
+         {'aliases': ['base_CircularApertureFlux_9_0_fluxSigma'],
+          'default': None,
+          'name': 'apMeanSb04Err',
+          'type': ['float', 'null']},
+         {'aliases': ['base_CircularApertureFlux_12_0_fluxSigma'],
+          'default': None,
+          'name': 'apMeanSb05Err',
+          'type': ['float', 'null']},
+         {'aliases': ['base_CircularApertureFlux_17_0_fluxSigma'],
+          'default': None,
+          'name': 'apMeanSb06Err',
+          'type': ['float', 'null']},
+         {'aliases': ['base_CircularApertureFlux_25_0_fluxSigma'],
+          'default': None,
+          'name': 'apMeanSb07Err',
+          'type': ['float', 'null']},
+         {'aliases': ['base_CircularApertureFlux_35_0_fluxSigma'],
+          'default': None,
+          'name': 'apMeanSb08Err',
+          'type': ['float', 'null']},
+         {'aliases': ['base_CircularApertureFlux_50_0_fluxSigma'],
+          'default': None,
+          'name': 'apMeanSb09Err',
+          'type': ['float', 'null']},
+         {'aliases': ['base_CircularApertureFlux_70_0_fluxSigma'],
+          'default': None,
+          'name': 'apMeanSb10Err',
+          'type': ['float', 'null']}],
+        'name': 'apFluxErr',
+        'namespace': 'lsst.alert',
+        'type': 'record'},
+       'null']},
+     {'name': 'snr', 'type': 'float'},
+     {'name': 'psFlux', 'type': 'float'},
+     {'default': None, 'name': 'psRa', 'type': ['double', 'null']},
+     {'default': None, 'name': 'psDecl', 'type': ['double', 'null']},
+     {'default': None,
+      'name': 'ps_Cov',
+      'type': [{'fields': [{'name': 'psFluxSigma', 'type': 'float'},
+         {'name': 'psRaSigma', 'type': 'float'},
+         {'name': 'psDeclSigma', 'type': 'float'},
+         {'name': 'psFlux_psRa_Cov', 'type': 'float'},
+         {'name': 'psFlux_psDecl_Cov', 'type': 'float'},
+         {'name': 'psRa_psDecl_Cov', 'type': 'float'}],
+        'name': 'ps_Cov',
+        'namespace': 'lsst.alert',
+        'type': 'record'},
+       'null']},
+     {'default': None, 'name': 'psLnL', 'type': ['float', 'null']},
+     {'default': None, 'name': 'psChi2', 'type': ['float', 'null']},
+     {'default': None, 'name': 'psNdata', 'type': ['int', 'null']},
+     {'default': None, 'name': 'trailFlux', 'type': ['float', 'null']},
+     {'default': None, 'name': 'trailRa', 'type': ['double', 'null']},
+     {'default': None, 'name': 'trailDecl', 'type': ['double', 'null']},
+     {'default': None, 'name': 'trailLength', 'type': ['float', 'null']},
+     {'default': None, 'name': 'trailAngle', 'type': ['float', 'null']},
+     {'default': None,
+      'name': 'trail_Cov',
+      'type': [{'fields': [{'name': 'trailFluxSigma', 'type': 'float'},
+         {'name': 'trailRaSigma', 'type': 'float'},
+         {'name': 'trailDeclSigma', 'type': 'float'},
+         {'name': 'trailLengthSigma', 'type': 'float'},
+         {'name': 'trailAngleSigma', 'type': 'float'},
+         {'name': 'trailFlux_trailRa_Cov', 'type': 'float'},
+         {'name': 'trailFlux_trailDecl_Cov', 'type': 'float'},
+         {'name': 'trailFlux_trailLength_Cov', 'type': 'float'},
+         {'name': 'trailFlux_trailAngle_Cov', 'type': 'float'},
+         {'name': 'trailRa_trailDecl_Cov', 'type': 'float'},
+         {'name': 'trailRa_trailLength_Cov', 'type': 'float'},
+         {'name': 'trailRa_trailAngle_Cov', 'type': 'float'},
+         {'name': 'trailDecl_trailLength_Cov', 'type': 'float'},
+         {'name': 'trailDecl_trailAngle_Cov', 'type': 'float'},
+         {'name': 'trailLength_trailAngle_Cov', 'type': 'float'}],
+        'name': 'trail_Cov',
+        'namespace': 'lsst.alert',
+        'type': 'record'},
+       'null']},
+     {'default': None, 'name': 'trailLnL', 'type': ['float', 'null']},
+     {'default': None, 'name': 'trailChi2', 'type': ['float', 'null']},
+     {'default': None, 'name': 'trailNdata', 'type': ['int', 'null']},
+     {'default': None, 'name': 'dipMeanFlux', 'type': ['float', 'null']},
+     {'default': None, 'name': 'dipFluxDiff', 'type': ['float', 'null']},
+     {'default': None, 'name': 'dipRa', 'type': ['double', 'null']},
+     {'default': None, 'name': 'dipDecl', 'type': ['double', 'null']},
+     {'default': None, 'name': 'dipLength', 'type': ['float', 'null']},
+     {'default': None, 'name': 'dipAngle', 'type': ['float', 'null']},
+     {'default': None,
+      'name': 'dip_Cov',
+      'type': [{'fields': [{'name': 'dipMeanFluxSigma', 'type': 'float'},
+         {'name': 'dipFluxDiffSigma', 'type': 'float'},
+         {'name': 'dipRaSigma', 'type': 'float'},
+         {'name': 'dipDeclSigma', 'type': 'float'},
+         {'name': 'dipLengthSigma', 'type': 'float'},
+         {'name': 'dipAngleSigma', 'type': 'float'},
+         {'name': 'dipMeanFlux_dipFluxDiff_Cov', 'type': 'float'},
+         {'name': 'dipMeanFlux_dipRa_Cov', 'type': 'float'},
+         {'name': 'dipMeanFlux_dipDecl_Cov', 'type': 'float'},
+         {'name': 'dipMeanFlux_dipLength_Cov', 'type': 'float'},
+         {'name': 'dipMeanFlux_dipAngle_Cov', 'type': 'float'},
+         {'name': 'dipFluxDiff_dipRa_Cov', 'type': 'float'},
+         {'name': 'dipFluxDiff_dipDecl_Cov', 'type': 'float'},
+         {'name': 'dipFluxDiff_dipLength_Cov', 'type': 'float'},
+         {'name': 'dipFluxDiff_dipAngle_Cov', 'type': 'float'},
+         {'name': 'dipRa_dipDecl_Cov', 'type': 'float'},
+         {'name': 'dipRa_dipLength_Cov', 'type': 'float'},
+         {'name': 'dipRa_dipAngle_Cov', 'type': 'float'},
+         {'name': 'dipDecl_dipLength_Cov', 'type': 'float'},
+         {'name': 'dipDecl_dipAngle_Cov', 'type': 'float'},
+         {'name': 'dipLength_dipAngle_Cov', 'type': 'float'}],
+        'name': 'dip_Cov',
+        'namespace': 'lsst.alert',
+        'type': 'record'},
+       'null']},
+     {'default': None, 'name': 'dipLnL', 'type': ['float', 'null']},
+     {'default': None, 'name': 'dipChi2', 'type': ['float', 'null']},
+     {'default': None, 'name': 'dipNdata', 'type': ['int', 'null']},
+     {'aliases': ['fpFlux'],
+      'default': None,
+      'name': 'totFlux',
+      'type': ['float', 'null']},
+     {'aliases': ['fpFluxSigma'],
+      'default': None,
+      'name': 'totFluxErr',
+      'type': ['float', 'null']},
+     {'default': None, 'name': 'diffFlux', 'type': ['float', 'null']},
+     {'default': None, 'name': 'diffFluxErr', 'type': ['float', 'null']},
+     {'aliases': ['fpSky'],
+      'default': None,
+      'name': 'fpBkgd',
+      'type': ['float', 'null']},
+     {'aliases': ['fpSkySigma'],
+      'default': None,
+      'name': 'fpBkgdErr',
+      'type': ['float', 'null']},
+     {'default': None, 'name': 'ixx', 'type': ['float', 'null']},
+     {'default': None, 'name': 'iyy', 'type': ['float', 'null']},
+     {'default': None, 'name': 'ixy', 'type': ['float', 'null']},
+     {'default': None,
+      'name': 'i_cov',
+      'type': [{'fields': [{'name': 'ixxSigma', 'type': 'float'},
+         {'name': 'iyySigma', 'type': 'float'},
+         {'name': 'ixySigma', 'type': 'float'},
+         {'name': 'ixx_iyy_Cov', 'type': 'float'},
+         {'name': 'ixx_ixy_Cov', 'type': 'float'},
+         {'name': 'iyy_ixy_Cov', 'type': 'float'}],
+        'name': 'i_cov',
+        'namespace': 'lsst.alert',
+        'type': 'record'},
+       'null']},
+     {'default': None, 'name': 'ixxPSF', 'type': ['float', 'null']},
+     {'default': None, 'name': 'iyyPSF', 'type': ['float', 'null']},
+     {'default': None, 'name': 'ixyPSF', 'type': ['float', 'null']},
+     {'default': None, 'name': 'extendedness', 'type': ['float', 'null']},
+     {'default': None, 'name': 'spuriousness', 'type': ['float', 'null']},
+     {'name': 'flags', 'type': 'long'}],
+    'name': 'diaSource',
+    'namespace': 'lsst.alert',
+    'type': 'record'}},
+  {'default': None,
+   'name': 'prv_diaSources',
+   'type': [{'items': 'lsst.alert.diaSource', 'type': 'array'}, 'null']},
+  {'default': None,
+   'name': 'diaObject',
+   'type': [{'fields': [{'name': 'diaObjectId', 'type': 'long'},
+      {'name': 'ra', 'type': 'double'},
+      {'name': 'decl', 'type': 'double'},
+      {'name': 'ra_decl_Cov',
+       'type': [{'fields': [{'name': 'raSigma', 'type': 'float'},
+          {'name': 'declSigma', 'type': 'float'},
+          {'name': 'ra_decl_Cov', 'type': 'float'}],
+         'name': 'ra_decl_Cov',
+         'namespace': 'lsst',
+         'type': 'record'}]},
+      {'name': 'radecTai', 'type': 'double'},
+      {'name': 'pmRa', 'type': 'float'},
+      {'name': 'pmDecl', 'type': 'float'},
+      {'name': 'parallax', 'type': 'float'},
+      {'name': 'pm_parallax_Cov',
+       'type': [{'fields': [{'name': 'pmRaSigma', 'type': 'float'},
+          {'name': 'pmDeclSigma', 'type': 'float'},
+          {'name': 'parallaxSigma', 'type': 'float'},
+          {'name': 'pmRa_pmDecl_Cov', 'type': 'float'},
+          {'name': 'pmRa_parallax_Cov', 'type': 'float'},
+          {'name': 'pmDecl_parallax_Cov', 'type': 'float'}],
+         'name': 'pm_parallax_Cov',
+         'namespace': 'lsst',
+         'type': 'record'}]},
+      {'name': 'pmParallaxLnL', 'type': 'float'},
+      {'name': 'pmParallaxChi2', 'type': 'float'},
+      {'name': 'pmParallaxNdata', 'type': 'int'},
+      {'default': None, 'name': 'uPSFluxMean', 'type': ['float', 'null']},
+      {'default': None, 'name': 'uPSFluxMeanErr', 'type': ['float', 'null']},
+      {'default': None, 'name': 'uPSFluxSigma', 'type': ['float', 'null']},
+      {'default': None, 'name': 'uPSFluxChi2', 'type': ['float', 'null']},
+      {'default': None, 'name': 'uPSFluxNdata', 'type': ['int', 'null']},
+      {'default': None, 'name': 'gPSFluxMean', 'type': ['float', 'null']},
+      {'default': None, 'name': 'gPSFluxMeanErr', 'type': ['float', 'null']},
+      {'default': None, 'name': 'gPSFluxSigma', 'type': ['float', 'null']},
+      {'default': None, 'name': 'gPSFluxChi2', 'type': ['float', 'null']},
+      {'default': None, 'name': 'gPSFluxNdata', 'type': ['int', 'null']},
+      {'default': None, 'name': 'rPSFluxMean', 'type': ['float', 'null']},
+      {'default': None, 'name': 'rPSFluxMeanErr', 'type': ['float', 'null']},
+      {'default': None, 'name': 'rPSFluxSigma', 'type': ['float', 'null']},
+      {'default': None, 'name': 'rPSFluxChi2', 'type': ['float', 'null']},
+      {'default': None, 'name': 'rPSFluxNdata', 'type': ['int', 'null']},
+      {'default': None, 'name': 'iPSFluxMean', 'type': ['float', 'null']},
+      {'default': None, 'name': 'iPSFluxMeanErr', 'type': ['float', 'null']},
+      {'default': None, 'name': 'iPSFluxSigma', 'type': ['float', 'null']},
+      {'default': None, 'name': 'iPSFluxChi2', 'type': ['float', 'null']},
+      {'default': None, 'name': 'iPSFluxNdata', 'type': ['int', 'null']},
+      {'default': None, 'name': 'zPSFluxMean', 'type': ['float', 'null']},
+      {'default': None, 'name': 'zPSFluxMeanErr', 'type': ['float', 'null']},
+      {'default': None, 'name': 'zPSFluxSigma', 'type': ['float', 'null']},
+      {'default': None, 'name': 'zPSFluxChi2', 'type': ['float', 'null']},
+      {'default': None, 'name': 'zPSFluxNdata', 'type': ['int', 'null']},
+      {'default': None, 'name': 'yPSFluxMean', 'type': ['float', 'null']},
+      {'default': None, 'name': 'yPSFluxMeanErr', 'type': ['float', 'null']},
+      {'default': None, 'name': 'yPSFluxSigma', 'type': ['float', 'null']},
+      {'default': None, 'name': 'yPSFluxChi2', 'type': ['float', 'null']},
+      {'default': None, 'name': 'yPSFluxNdata', 'type': ['int', 'null']},
+      {'default': None, 'name': 'uFPFluxMean', 'type': ['float', 'null']},
+      {'default': None, 'name': 'uFPFluxMeanErr', 'type': ['float', 'null']},
+      {'default': None, 'name': 'uFPFluxSigma', 'type': ['float', 'null']},
+      {'default': None, 'name': 'gFPFluxMean', 'type': ['float', 'null']},
+      {'default': None, 'name': 'gFPFluxMeanErr', 'type': ['float', 'null']},
+      {'default': None, 'name': 'gFPFluxSigma', 'type': ['float', 'null']},
+      {'default': None, 'name': 'rFPFluxMean', 'type': ['float', 'null']},
+      {'default': None, 'name': 'rFPFluxMeanErr', 'type': ['float', 'null']},
+      {'default': None, 'name': 'rFPFluxSigma', 'type': ['float', 'null']},
+      {'default': None, 'name': 'iFPFluxMean', 'type': ['float', 'null']},
+      {'default': None, 'name': 'iFPFluxMeanErr', 'type': ['float', 'null']},
+      {'default': None, 'name': 'iFPFluxSigma', 'type': ['float', 'null']},
+      {'default': None, 'name': 'zFPFluxMean', 'type': ['float', 'null']},
+      {'default': None, 'name': 'zFPFluxMeanErr', 'type': ['float', 'null']},
+      {'default': None, 'name': 'zFPFluxSigma', 'type': ['float', 'null']},
+      {'default': None, 'name': 'yFPFluxMean', 'type': ['float', 'null']},
+      {'default': None, 'name': 'yFPFluxMeanErr', 'type': ['float', 'null']},
+      {'default': None, 'name': 'yFPFluxSigma', 'type': ['float', 'null']},
+      {'default': None,
+       'name': 'uLcPeriodic',
+       'type': [{'fields': [{'default': None,
+           'name': 'uLcPeriodic01',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcPeriodic02',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcPeriodic03',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcPeriodic04',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcPeriodic05',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcPeriodic06',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcPeriodic07',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcPeriodic08',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcPeriodic09',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcPeriodic10',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcPeriodic11',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcPeriodic12',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcPeriodic13',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcPeriodic14',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcPeriodic15',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcPeriodic16',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcPeriodic17',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcPeriodic18',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcPeriodic19',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcPeriodic20',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcPeriodic21',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcPeriodic22',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcPeriodic23',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcPeriodic24',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcPeriodic25',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcPeriodic26',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcPeriodic27',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcPeriodic28',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcPeriodic29',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcPeriodic30',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcPeriodic31',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcPeriodic32',
+           'type': ['float', 'null']}],
+         'name': 'uLcPeriodic',
+         'namespace': 'lsst',
+         'type': 'record'},
+        'null']},
+      {'default': None,
+       'name': 'gLcPeriodic',
+       'type': [{'fields': [{'default': None,
+           'name': 'gLcPeriodic01',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcPeriodic02',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcPeriodic03',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcPeriodic04',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcPeriodic05',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcPeriodic06',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcPeriodic07',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcPeriodic08',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcPeriodic09',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcPeriodic10',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcPeriodic11',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcPeriodic12',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcPeriodic13',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcPeriodic14',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcPeriodic15',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcPeriodic16',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcPeriodic17',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcPeriodic18',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcPeriodic19',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcPeriodic20',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcPeriodic21',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcPeriodic22',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcPeriodic23',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcPeriodic24',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcPeriodic25',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcPeriodic26',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcPeriodic27',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcPeriodic28',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcPeriodic29',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcPeriodic30',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcPeriodic31',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcPeriodic32',
+           'type': ['float', 'null']}],
+         'name': 'gLcPeriodic',
+         'namespace': 'lsst',
+         'type': 'record'},
+        'null']},
+      {'default': None,
+       'name': 'rLcPeriodic',
+       'type': [{'fields': [{'default': None,
+           'name': 'rLcPeriodic01',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcPeriodic02',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcPeriodic03',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcPeriodic04',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcPeriodic05',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcPeriodic06',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcPeriodic07',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcPeriodic08',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcPeriodic09',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcPeriodic10',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcPeriodic11',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcPeriodic12',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcPeriodic13',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcPeriodic14',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcPeriodic15',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcPeriodic16',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcPeriodic17',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcPeriodic18',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcPeriodic19',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcPeriodic20',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcPeriodic21',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcPeriodic22',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcPeriodic23',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcPeriodic24',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcPeriodic25',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcPeriodic26',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcPeriodic27',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcPeriodic28',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcPeriodic29',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcPeriodic30',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcPeriodic31',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcPeriodic32',
+           'type': ['float', 'null']}],
+         'name': 'rLcPeriodic',
+         'namespace': 'lsst',
+         'type': 'record'},
+        'null']},
+      {'default': None,
+       'name': 'iLcPeriodic',
+       'type': [{'fields': [{'default': None,
+           'name': 'iLcPeriodic01',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcPeriodic02',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcPeriodic03',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcPeriodic04',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcPeriodic05',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcPeriodic06',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcPeriodic07',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcPeriodic08',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcPeriodic09',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcPeriodic10',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcPeriodic11',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcPeriodic12',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcPeriodic13',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcPeriodic14',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcPeriodic15',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcPeriodic16',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcPeriodic17',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcPeriodic18',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcPeriodic19',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcPeriodic20',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcPeriodic21',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcPeriodic22',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcPeriodic23',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcPeriodic24',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcPeriodic25',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcPeriodic26',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcPeriodic27',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcPeriodic28',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcPeriodic29',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcPeriodic30',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcPeriodic31',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcPeriodic32',
+           'type': ['float', 'null']}],
+         'name': 'iLcPeriodic',
+         'namespace': 'lsst',
+         'type': 'record'},
+        'null']},
+      {'default': None,
+       'name': 'zLcPeriodic',
+       'type': [{'fields': [{'default': None,
+           'name': 'zLcPeriodic01',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcPeriodic02',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcPeriodic03',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcPeriodic04',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcPeriodic05',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcPeriodic06',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcPeriodic07',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcPeriodic08',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcPeriodic09',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcPeriodic10',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcPeriodic11',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcPeriodic12',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcPeriodic13',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcPeriodic14',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcPeriodic15',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcPeriodic16',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcPeriodic17',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcPeriodic18',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcPeriodic19',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcPeriodic20',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcPeriodic21',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcPeriodic22',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcPeriodic23',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcPeriodic24',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcPeriodic25',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcPeriodic26',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcPeriodic27',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcPeriodic28',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcPeriodic29',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcPeriodic30',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcPeriodic31',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcPeriodic32',
+           'type': ['float', 'null']}],
+         'name': 'zLcPeriodic',
+         'namespace': 'lsst',
+         'type': 'record'},
+        'null']},
+      {'default': None,
+       'name': 'yLcPeriodic',
+       'type': [{'fields': [{'default': None,
+           'name': 'yLcPeriodic01',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcPeriodic02',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcPeriodic03',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcPeriodic04',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcPeriodic05',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcPeriodic06',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcPeriodic07',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcPeriodic08',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcPeriodic09',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcPeriodic10',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcPeriodic11',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcPeriodic12',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcPeriodic13',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcPeriodic14',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcPeriodic15',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcPeriodic16',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcPeriodic17',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcPeriodic18',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcPeriodic19',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcPeriodic20',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcPeriodic21',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcPeriodic22',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcPeriodic23',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcPeriodic24',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcPeriodic25',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcPeriodic26',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcPeriodic27',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcPeriodic28',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcPeriodic29',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcPeriodic30',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcPeriodic31',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcPeriodic32',
+           'type': ['float', 'null']}],
+         'name': 'yLcPeriodic',
+         'namespace': 'lsst',
+         'type': 'record'},
+        'null']},
+      {'default': None,
+       'name': 'uLcNonPeriodic',
+       'type': [{'fields': [{'default': None,
+           'name': 'uLcNonPeriodic01',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcNonPeriodic02',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcNonPeriodic03',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcNonPeriodic04',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcNonPeriodic05',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcNonPeriodic06',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcNonPeriodic07',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcNonPeriodic08',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcNonPeriodic09',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcNonPeriodic10',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcNonPeriodic11',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcNonPeriodic12',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcNonPeriodic13',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcNonPeriodic14',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcNonPeriodic15',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcNonPeriodic16',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcNonPeriodic17',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcNonPeriodic18',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcNonPeriodic19',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'uLcNonPeriodic20',
+           'type': ['float', 'null']}],
+         'name': 'uLcNonPeriodic',
+         'namespace': 'lsst',
+         'type': 'record'},
+        'null']},
+      {'default': None,
+       'name': 'gLcNonPeriodic',
+       'type': [{'fields': [{'default': None,
+           'name': 'gLcNonPeriodic01',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcNonPeriodic02',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcNonPeriodic03',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcNonPeriodic04',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcNonPeriodic05',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcNonPeriodic06',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcNonPeriodic07',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcNonPeriodic08',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcNonPeriodic09',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcNonPeriodic10',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcNonPeriodic11',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcNonPeriodic12',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcNonPeriodic13',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcNonPeriodic14',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcNonPeriodic15',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcNonPeriodic16',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcNonPeriodic17',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcNonPeriodic18',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcNonPeriodic19',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'gLcNonPeriodic20',
+           'type': ['float', 'null']}],
+         'name': 'gLcNonPeriodic',
+         'namespace': 'lsst',
+         'type': 'record'},
+        'null']},
+      {'default': None,
+       'name': 'rLcNonPeriodic',
+       'type': [{'fields': [{'default': None,
+           'name': 'rLcNonPeriodic01',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcNonPeriodic02',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcNonPeriodic03',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcNonPeriodic04',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcNonPeriodic05',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcNonPeriodic06',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcNonPeriodic07',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcNonPeriodic08',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcNonPeriodic09',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcNonPeriodic10',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcNonPeriodic11',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcNonPeriodic12',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcNonPeriodic13',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcNonPeriodic14',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcNonPeriodic15',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcNonPeriodic16',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcNonPeriodic17',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcNonPeriodic18',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcNonPeriodic19',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'rLcNonPeriodic20',
+           'type': ['float', 'null']}],
+         'name': 'rLcNonPeriodic',
+         'namespace': 'lsst',
+         'type': 'record'},
+        'null']},
+      {'default': None,
+       'name': 'iLcNonPeriodic',
+       'type': [{'fields': [{'default': None,
+           'name': 'iLcNonPeriodic01',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcNonPeriodic02',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcNonPeriodic03',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcNonPeriodic04',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcNonPeriodic05',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcNonPeriodic06',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcNonPeriodic07',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcNonPeriodic08',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcNonPeriodic09',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcNonPeriodic10',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcNonPeriodic11',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcNonPeriodic12',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcNonPeriodic13',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcNonPeriodic14',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcNonPeriodic15',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcNonPeriodic16',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcNonPeriodic17',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcNonPeriodic18',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcNonPeriodic19',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'iLcNonPeriodic20',
+           'type': ['float', 'null']}],
+         'name': 'iLcNonPeriodic',
+         'namespace': 'lsst',
+         'type': 'record'},
+        'null']},
+      {'default': None,
+       'name': 'zLcNonPeriodic',
+       'type': [{'fields': [{'default': None,
+           'name': 'zLcNonPeriodic01',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcNonPeriodic02',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcNonPeriodic03',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcNonPeriodic04',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcNonPeriodic05',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcNonPeriodic06',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcNonPeriodic07',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcNonPeriodic08',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcNonPeriodic09',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcNonPeriodic10',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcNonPeriodic11',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcNonPeriodic12',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcNonPeriodic13',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcNonPeriodic14',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcNonPeriodic15',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcNonPeriodic16',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcNonPeriodic17',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcNonPeriodic18',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcNonPeriodic19',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'zLcNonPeriodic20',
+           'type': ['float', 'null']}],
+         'name': 'zLcNonPeriodic',
+         'namespace': 'lsst',
+         'type': 'record'},
+        'null']},
+      {'default': None,
+       'name': 'yLcNonPeriodic',
+       'type': [{'fields': [{'default': None,
+           'name': 'yLcNonPeriodic01',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcNonPeriodic02',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcNonPeriodic03',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcNonPeriodic04',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcNonPeriodic05',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcNonPeriodic06',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcNonPeriodic07',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcNonPeriodic08',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcNonPeriodic09',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcNonPeriodic10',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcNonPeriodic11',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcNonPeriodic12',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcNonPeriodic13',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcNonPeriodic14',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcNonPeriodic15',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcNonPeriodic16',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcNonPeriodic17',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcNonPeriodic18',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcNonPeriodic19',
+           'type': ['float', 'null']},
+          {'default': None,
+           'name': 'yLcNonPeriodic20',
+           'type': ['float', 'null']}],
+         'name': 'yLcNonPeriodic',
+         'namespace': 'lsst',
+         'type': 'record'},
+        'null']},
+      {'default': None, 'name': 'nearbyObj1', 'type': ['long', 'null']},
+      {'default': None, 'name': 'nearbyObj1Dist', 'type': ['float', 'null']},
+      {'default': None, 'name': 'nearbyObj1LnP', 'type': ['float', 'null']},
+      {'default': None, 'name': 'nearbyObj2', 'type': ['long', 'null']},
+      {'default': None, 'name': 'nearbyObj2Dist', 'type': ['float', 'null']},
+      {'default': None, 'name': 'nearbyObj2LnP', 'type': ['float', 'null']},
+      {'default': None, 'name': 'nearbyObj3', 'type': ['long', 'null']},
+      {'default': None, 'name': 'nearbyObj3Dist', 'type': ['float', 'null']},
+      {'default': None, 'name': 'nearbyObj3LnP', 'type': ['float', 'null']},
+      {'name': 'flags', 'type': 'long'}],
+     'name': 'diaObject',
+     'namespace': 'lsst',
+     'type': 'record'},
+    'null']},
+  {'default': None,
+   'name': 'ssObject',
+   'type': [{'fields': [{'name': 'ssObjectId', 'type': 'long'},
+      {'default': None,
+       'name': 'oe',
+       'type': [{'fields': [{'default': None,
+           'name': 'q',
+           'type': ['double', 'null']},
+          {'default': None, 'name': 'e', 'type': ['double', 'null']},
+          {'default': None, 'name': 'i', 'type': ['double', 'null']},
+          {'default': None, 'name': 'lan', 'type': ['double', 'null']},
+          {'default': None, 'name': 'aop', 'type': ['double', 'null']},
+          {'default': None, 'name': 'M', 'type': ['double', 'null']},
+          {'default': None, 'name': 'epoch', 'type': ['double', 'null']}],
+         'name': 'oe',
+         'namespace': 'lsst',
+         'type': 'record'},
+        'null']},
+      {'default': None,
+       'name': 'oe_Cov',
+       'type': [{'fields': [{'default': None,
+           'name': 'qSigma',
+           'type': ['double', 'null']},
+          {'default': None, 'name': 'eSigma', 'type': ['double', 'null']},
+          {'default': None, 'name': 'iSigma', 'type': ['double', 'null']},
+          {'default': None, 'name': 'lanSigma', 'type': ['double', 'null']},
+          {'default': None, 'name': 'aopSigma', 'type': ['double', 'null']},
+          {'default': None, 'name': 'MSigma', 'type': ['double', 'null']},
+          {'default': None, 'name': 'epochSigma', 'type': ['double', 'null']},
+          {'default': None, 'name': 'q_e_Cov', 'type': ['double', 'null']},
+          {'default': None, 'name': 'q_i_Cov', 'type': ['double', 'null']},
+          {'default': None, 'name': 'q_lan_Cov', 'type': ['double', 'null']},
+          {'default': None, 'name': 'q_aop_Cov', 'type': ['double', 'null']},
+          {'default': None, 'name': 'q_M_Cov', 'type': ['double', 'null']},
+          {'default': None, 'name': 'q_epoch_Cov', 'type': ['double', 'null']},
+          {'default': None, 'name': 'e_i_Cov', 'type': ['double', 'null']},
+          {'default': None, 'name': 'e_lan_Cov', 'type': ['double', 'null']},
+          {'default': None, 'name': 'e_aop_Cov', 'type': ['double', 'null']},
+          {'default': None, 'name': 'e_M_Cov', 'type': ['double', 'null']},
+          {'default': None, 'name': 'e_epoch_Cov', 'type': ['double', 'null']},
+          {'default': None, 'name': 'i_lan_Cov', 'type': ['double', 'null']},
+          {'default': None, 'name': 'i_aop_Cov', 'type': ['double', 'null']},
+          {'default': None, 'name': 'i_M_Cov', 'type': ['double', 'null']},
+          {'default': None, 'name': 'i_epoch_Cov', 'type': ['double', 'null']},
+          {'default': None, 'name': 'lan_aop_Cov', 'type': ['double', 'null']},
+          {'default': None, 'name': 'lan_M_Cov', 'type': ['double', 'null']},
+          {'default': None,
+           'name': 'lan_epoch_Cov',
+           'type': ['double', 'null']},
+          {'default': None, 'name': 'aop_M_Cov', 'type': ['double', 'null']},
+          {'default': None,
+           'name': 'aop_epoch_Cov',
+           'type': ['double', 'null']},
+          {'default': None,
+           'name': 'M_epoch_Cov',
+           'type': ['double', 'null']}],
+         'name': 'oe_Cov',
+         'namespace': 'lsst',
+         'type': 'record'},
+        'null']},
+      {'default': None, 'name': 'arc', 'type': ['float', 'null']},
+      {'default': None, 'name': 'orbFitLnL', 'type': ['float', 'null']},
+      {'default': None, 'name': 'orbFitChi2', 'type': ['float', 'null']},
+      {'default': None, 'name': 'orbFitNdata', 'type': ['int', 'null']},
+      {'default': None, 'name': 'MOID1', 'type': ['float', 'null']},
+      {'default': None, 'name': 'MOID2', 'type': ['float', 'null']},
+      {'default': None, 'name': 'moidLon1', 'type': ['double', 'null']},
+      {'default': None, 'name': 'moidLon2', 'type': ['double', 'null']},
+      {'default': None, 'name': 'uH', 'type': ['float', 'null']},
+      {'default': None, 'name': 'uHErr', 'type': ['float', 'null']},
+      {'default': None, 'name': 'uG1', 'type': ['float', 'null']},
+      {'default': None, 'name': 'uG1Err', 'type': ['float', 'null']},
+      {'default': None, 'name': 'uG2', 'type': ['float', 'null']},
+      {'default': None, 'name': 'uG2Err', 'type': ['float', 'null']},
+      {'default': None, 'name': 'gH', 'type': ['float', 'null']},
+      {'default': None, 'name': 'gHErr', 'type': ['float', 'null']},
+      {'default': None, 'name': 'gG1', 'type': ['float', 'null']},
+      {'default': None, 'name': 'gG1Err', 'type': ['float', 'null']},
+      {'default': None, 'name': 'gG2', 'type': ['float', 'null']},
+      {'default': None, 'name': 'gG2Err', 'type': ['float', 'null']},
+      {'default': None, 'name': 'rH', 'type': ['float', 'null']},
+      {'default': None, 'name': 'rHErr', 'type': ['float', 'null']},
+      {'default': None, 'name': 'rG1', 'type': ['float', 'null']},
+      {'default': None, 'name': 'rG1Err', 'type': ['float', 'null']},
+      {'default': None, 'name': 'rG2', 'type': ['float', 'null']},
+      {'default': None, 'name': 'rG2Err', 'type': ['float', 'null']},
+      {'default': None, 'name': 'iH', 'type': ['float', 'null']},
+      {'default': None, 'name': 'iHErr', 'type': ['float', 'null']},
+      {'default': None, 'name': 'iG1', 'type': ['float', 'null']},
+      {'default': None, 'name': 'iG1Err', 'type': ['float', 'null']},
+      {'default': None, 'name': 'iG2', 'type': ['float', 'null']},
+      {'default': None, 'name': 'iG2Err', 'type': ['float', 'null']},
+      {'default': None, 'name': 'zH', 'type': ['float', 'null']},
+      {'default': None, 'name': 'zHErr', 'type': ['float', 'null']},
+      {'default': None, 'name': 'zG1', 'type': ['float', 'null']},
+      {'default': None, 'name': 'zG1Err', 'type': ['float', 'null']},
+      {'default': None, 'name': 'zG2', 'type': ['float', 'null']},
+      {'default': None, 'name': 'zG2Err', 'type': ['float', 'null']},
+      {'default': None, 'name': 'yH', 'type': ['float', 'null']},
+      {'default': None, 'name': 'yHErr', 'type': ['float', 'null']},
+      {'default': None, 'name': 'yG1', 'type': ['float', 'null']},
+      {'default': None, 'name': 'yG1Err', 'type': ['float', 'null']},
+      {'default': None, 'name': 'yG2', 'type': ['float', 'null']},
+      {'default': None, 'name': 'yG2Err', 'type': ['float', 'null']},
+      {'name': 'flags', 'type': 'long'}],
+     'name': 'ssObject',
+     'namespace': 'lsst',
+     'type': 'record'},
+    'null']},
+  {'default': None, 'name': 'diaObjectL2', 'type': ['lsst.diaObject', 'null']},
+  {'default': None,
+   'name': 'diaSourcesL2',
+   'type': [{'items': 'lsst.alert.diaSource', 'type': 'array'}, 'null']},
+  {'default': None,
+   'name': 'cutoutDifference',
+   'type': [{'fields': [{'name': 'fileName', 'type': 'string'},
+      {'name': 'stampData', 'type': 'bytes'}],
+     'name': 'cutout',
+     'namespace': 'lsst.alert',
+     'type': 'record'},
+    'null']},
+  {'default': None,
+   'name': 'cutoutTemplate',
+   'type': ['lsst.alert.cutout', 'null']}],
+ 'name': 'alert',
+ 'namespace': 'lsst',
+ 'type': 'record'}
+
+ +
+ +
+
+ +
+
+
+
+
+
+

Prep Spark environment

Need some packages to talk to Kafka.

+ +
+
+
+
+
+
In [8]:
+
+
+
import os
+os.environ['PYSPARK_SUBMIT_ARGS'] = '--packages org.apache.spark:spark-streaming-kafka-0-8_2.11:2.1.0,org.apache.spark:spark-sql-kafka-0-10_2.11:2.1.0,com.databricks:spark-avro_2.11:3.2.0 pyspark-shell'
+
+ +
+
+
+ +
+
+
+
In [9]:
+
+
+
from pyspark import SparkContext
+from pyspark.streaming import StreamingContext
+from pyspark.streaming.kafka import KafkaUtils
+
+# define the update function
+def updateTotalCount(currentCount, countState):
+    if countState is None:
+       countState = 0
+    return sum(currentCount, countState)
+
+# create spark and streaming contexts
+sc = SparkContext("local[*]", "KafkaDirectStreamAvro")
+ssc = StreamingContext(sc, 10)
+
+# defining the checkpoint directory
+ssc.checkpoint("/tmp")
+
+ +
+
+
+ +
+
+
+
+
+
+

Start a Kafka stream for Spark to subscribe

No stamps, uses Avro schemaless encoding.

+ +
+
+
+
+
+
+
+
+

With lsst-dm/alert_stream, in an external shell:

+

docker run -it --network=alertstream_default alert_stream python bin/sendAlertStream.py my-stream 10 --no-stamps

+

docker run -it --network=alertstream_default alert_stream python bin/sendAlertStream.py my-stream 10 --no-stamps

+ +
+
+
+
+
+
+
+
+

Create output for Spark to print

kafkaStream is configured with decoding applied to the value directly.

+

alerts grabs the actual alert messages.

+

alertIds applies a 'filter' that just grabs individual alertId's.

+

alertId_counts does a count of the events in alertId_dstream for the configured window (10 seconds).

+ +
+
+
+
+
+
In [10]:
+
+
+
import io
+
+def decoder(msg):
+    bytes_io = io.BytesIO(msg)
+    bytes_io.seek(0)
+    alert = fastavro.schemaless_reader(bytes_io, schema)
+    return alert
+
+ +
+
+
+ +
+
+
+
In [11]:
+
+
+
kafkaStream = KafkaUtils.createDirectStream(ssc, ['my-stream'], {'bootstrap.servers': 'kafka:9092',
+            'auto.offset.reset': 'smallest', 'group.id': 'spark-group' }, valueDecoder=decoder)
+
+alerts = kafkaStream.map(lambda x: x[1])
+alerts.pprint()
+
+ +
+
+
+ +
+
+
+
In [12]:
+
+
+
def filter_alertId(alert):
+    return alert['alertId']
+
+ +
+
+
+ +
+
+
+
In [13]:
+
+
+
alertIds = alerts.map(filter_alertId)
+alertIds.pprint()
+
+ +
+
+
+ +
+
+
+
In [14]:
+
+
+
alertId_counts = alertIds.countByValue()
+alertId_counts.pprint()
+
+ +
+
+
+ +
+
+
+
+
+
+

Start the streaming context

Output pprints of the streams above appear.

+ +
+
+
+
+
+
In [15]:
+
+
+
ssc.start()
+ssc.awaitTermination()
+
+ +
+
+
+ +
+
+ + +
+
+ +
+
-------------------------------------------
+Time: 2017-04-20 23:55:00
+-------------------------------------------
+{'cutoutTemplate': None, 'diaObjectL2': {'iFPFluxMeanErr': None, 'uFPFluxSigma': None, 'nearbyObj1Dist': None, 'uPSFluxChi2': None, 'decl': 0.126243049656, 'yFPFluxMeanErr': None, 'zPSFluxChi2': None, 'pmDecl': 0.00014000000373926014, 'yFPFluxMean': None, 'nearbyObj1LnP': None, 'pmParallaxChi2': 0.00013000000035390258, 'pmParallaxLnL': 0.00013000000035390258, 'rFPFluxMeanErr': None, 'yPSFluxMeanErr': None, 'rPSFluxMean': None, 'ra': 351.570546978, 'gFPFluxMean': None, 'gPSFluxNdata': None, 'rPSFluxChi2': None, 'uLcPeriodic': None, 'yPSFluxNdata': None, 'iPSFluxSigma': None, 'zFPFluxMeanErr': None, 'iPSFluxChi2': None, 'rLcPeriodic': None, 'pm_parallax_Cov': {'pmDecl_parallax_Cov': 0.00013000000035390258, 'pmRa_pmDecl_Cov': 0.00013000000035390258, 'pmRa_parallax_Cov': 0.00013000000035390258, 'pmDeclSigma': 0.00013000000035390258, 'parallaxSigma': 0.00013000000035390258, 'pmRaSigma': 0.00013000000035390258}, 'yPSFluxMean': None, 'ra_decl_Cov': {'declSigma': 0.0002800000074785203, 'ra_decl_Cov': 0.0002899999963119626, 'raSigma': 0.0002800000074785203}, 'nearbyObj2Dist': None, 'gPSFluxMean': None, 'uPSFluxMeanErr': None, 'gPSFluxMeanErr': None, 'rPSFluxMeanErr': None, 'zLcPeriodic': None, 'nearbyObj3': None, 'gFPFluxMeanErr': None, 'zPSFluxNdata': None, 'zPSFluxSigma': None, 'iLcPeriodic': None, 'nearbyObj3Dist': None, 'yFPFluxSigma': None, 'uPSFluxNdata': None, 'yPSFluxSigma': None, 'zPSFluxMean': None, 'uPSFluxMean': None, 'zLcNonPeriodic': None, 'radecTai': 1480360995.0, 'uPSFluxSigma': None, 'gPSFluxSigma': None, 'zFPFluxMean': None, 'iPSFluxNdata': None, 'iPSFluxMean': None, 'flags': 0, 'uFPFluxMeanErr': None, 'yLcPeriodic': None, 'iPSFluxMeanErr': None, 'rLcNonPeriodic': None, 'uLcNonPeriodic': None, 'nearbyObj2': None, 'rPSFluxNdata': None, 'gLcNonPeriodic': None, 'pmRa': 0.00013000000035390258, 'nearbyObj3LnP': None, 'pmParallaxNdata': 1214, 'nearbyObj2LnP': None, 'rPSFluxSigma': None, 'gLcPeriodic': None, 'diaObjectId': 281323062375219201, 'gFPFluxSigma': None, 'nearbyObj1': None, 'rFPFluxSigma': None, 'rFPFluxMean': None, 'zPSFluxMeanErr': None, 'iLcNonPeriodic': None, 'uFPFluxMean': None, 'zFPFluxSigma': None, 'iFPFluxMean': None, 'iFPFluxSigma': None, 'yPSFluxChi2': None, 'yLcNonPeriodic': None, 'parallax': 2.124124050140381, 'gPSFluxChi2': None}, 'cutoutDifference': None, 'diaSource': {'x_y_Cov': {'x_y_Cov': 1.2000000476837158, 'ySigma': 1.100000023841858, 'xSigma': 1.2000000476837158}, 'iyy': None, 'trailDecl': None, 'decl': 0.126243049656, 'dip_Cov': None, 'psDecl': None, 'dipLength': None, 'fpBkgd': None, 'filterName': 'r', 'trailAngle': None, 'totFlux': None, 'ra': 351.570546978, 'diaSourceId': 281323062375219200, 'trailChi2': None, 'trailNdata': None, 'flags': 0, 'dipDecl': None, 'psChi2': None, 'i_cov': None, 'ixx': None, 'psLnL': None, 'ixxPSF': None, 'trailLnL': None, 'dipRa': None, 'dipAngle': None, 'y': 121.0999984741211, 'parentDiaSourceId': None, 'ra_decl_Cov': {'declSigma': 0.0002800000074785203, 'ra_decl_Cov': 0.0002899999963119626, 'raSigma': 0.0002800000074785203}, 'x': 112.0999984741211, 'ssObjectId': None, 'diaObjectId': None, 'apFlux': None, 'trailRa': None, 'dipLnL': None, 'snr': 41.099998474121094, 'totFluxErr': None, 'dipMeanFlux': None, 'extendedness': None, 'spuriousness': None, 'ps_Cov': None, 'iyyPSF': None, 'trail_Cov': None, 'psRa': None, 'ccdVisitId': 111111, 'dipChi2': None, 'fpBkgdErr': None, 'trailLength': None, 'ixyPSF': None, 'dipNdata': None, 'apFluxErr': None, 'diffFluxErr': None, 'midPointTai': 1480360995.0, 'diffFlux': None, 'trailFlux': None, 'dipFluxDiff': None, 'psNdata': None, 'psFlux': 1241.0, 'ixy': None}, 'alertId': 1231321321, 'ssObject': {'moidLon2': 3142.23123, 'iH': None, 'moidLon1': 2143.213, 'yH': None, 'MOID1': 3141.0, 'gG1': None, 'MOID2': 23432.423828125, 'oe': {'i': 5436.2344, 'q': 6654.14, 'lan': 54325.34, 'M': 131.1241, 'aop': 344243.3, 'e': 636.121, 'epoch': 134141.0}, 'flags': 0, 'uG1Err': 31232.212890625, 'rHErr': None, 'iG2Err': None, 'oe_Cov': None, 'zG1': None, 'yHErr': None, 'arc': 2.124124050140381, 'zG2': None, 'gG2': None, 'gHErr': None, 'orbFitLnL': 1343141.0, 'gG2Err': None, 'iHErr': None, 'orbFitNdata': 1214, 'ssObjectId': 5364546, 'zHErr': None, 'rG1': None, 'iG2': None, 'zG1Err': None, 'rG2': None, 'uHErr': 13213.212890625, 'rG2Err': None, 'yG2Err': None, 'uH': 13231.2314453125, 'uG2Err': 23132.23046875, 'uG1': 32131.3125, 'gH': None, 'iG1Err': None, 'yG1': None, 'uG2': 231.23129272460938, 'rG1Err': None, 'yG1Err': None, 'gG1Err': None, 'zG2Err': None, 'zH': None, 'orbFitChi2': 1341421.25, 'yG2': None, 'iG1': None, 'rH': None}, 'diaSourcesL2': [{'x_y_Cov': {'x_y_Cov': 1.2000000476837158, 'ySigma': 1.100000023841858, 'xSigma': 1.2000000476837158}, 'iyy': None, 'trailDecl': None, 'decl': 0.126243049656, 'dip_Cov': None, 'psDecl': None, 'dipLength': None, 'fpBkgd': None, 'filterName': 'r', 'trailAngle': None, 'totFlux': None, 'ra': 351.570546978, 'diaSourceId': 281323062375219198, 'trailChi2': None, 'trailNdata': None, 'flags': 0, 'dipDecl': None, 'psChi2': None, 'i_cov': None, 'ixx': None, 'psLnL': None, 'ixxPSF': None, 'trailLnL': None, 'dipRa': None, 'dipAngle': None, 'y': 121.0999984741211, 'parentDiaSourceId': None, 'ra_decl_Cov': {'declSigma': 0.0002800000074785203, 'ra_decl_Cov': 0.0002899999963119626, 'raSigma': 0.0002800000074785203}, 'x': 112.0999984741211, 'ssObjectId': None, 'diaObjectId': None, 'apFlux': None, 'trailRa': None, 'dipLnL': None, 'snr': 41.099998474121094, 'totFluxErr': None, 'dipMeanFlux': None, 'extendedness': None, 'spuriousness': None, 'ps_Cov': None, 'iyyPSF': None, 'trail_Cov': None, 'psRa': None, 'ccdVisitId': 111111, 'dipChi2': None, 'fpBkgdErr': None, 'trailLength': None, 'ixyPSF': None, 'dipNdata': None, 'apFluxErr': None, 'diffFluxErr': None, 'midPointTai': 1480360995.0, 'diffFlux': None, 'trailFlux': None, 'dipFluxDiff': None, 'psNdata': None, 'psFlux': 1241.0, 'ixy': None}, {'x_y_Cov': {'x_y_Cov': 1.2000000476837158, 'ySigma': 1.100000023841858, 'xSigma': 1.2000000476837158}, 'iyy': None, 'trailDecl': None, 'decl': 0.126243049656, 'dip_Cov': None, 'psDecl': None, 'dipLength': None, 'fpBkgd': None, 'filterName': 'r', 'trailAngle': None, 'totFlux': None, 'ra': 351.570546978, 'diaSourceId': 281323062375219199, 'trailChi2': None, 'trailNdata': None, 'flags': 0, 'dipDecl': None, 'psChi2': None, 'i_cov': None, 'ixx': None, 'psLnL': None, 'ixxPSF': None, 'trailLnL': None, 'dipRa': None, 'dipAngle': None, 'y': 121.0999984741211, 'parentDiaSourceId': None, 'ra_decl_Cov': {'declSigma': 0.0002800000074785203, 'ra_decl_Cov': 0.0002899999963119626, 'raSigma': 0.0002800000074785203}, 'x': 112.0999984741211, 'ssObjectId': None, 'diaObjectId': None, 'apFlux': None, 'trailRa': None, 'dipLnL': None, 'snr': 41.099998474121094, 'totFluxErr': None, 'dipMeanFlux': None, 'extendedness': None, 'spuriousness': None, 'ps_Cov': None, 'iyyPSF': None, 'trail_Cov': None, 'psRa': None, 'ccdVisitId': 111111, 'dipChi2': None, 'fpBkgdErr': None, 'trailLength': None, 'ixyPSF': None, 'dipNdata': None, 'apFluxErr': None, 'diffFluxErr': None, 'midPointTai': 1480360995.0, 'diffFlux': None, 'trailFlux': None, 'dipFluxDiff': None, 'psNdata': None, 'psFlux': 1241.0, 'ixy': None}], 'prv_diaSources': [{'x_y_Cov': {'x_y_Cov': 1.2000000476837158, 'ySigma': 1.100000023841858, 'xSigma': 1.2000000476837158}, 'iyy': None, 'trailDecl': None, 'decl': 0.126243049656, 'dip_Cov': None, 'psDecl': None, 'dipLength': None, 'fpBkgd': None, 'filterName': 'r', 'trailAngle': None, 'totFlux': None, 'ra': 351.570546978, 'diaSourceId': 281323062375219198, 'trailChi2': None, 'trailNdata': None, 'flags': 0, 'dipDecl': None, 'psChi2': None, 'i_cov': None, 'ixx': None, 'psLnL': None, 'ixxPSF': None, 'trailLnL': None, 'dipRa': None, 'dipAngle': None, 'y': 121.0999984741211, 'parentDiaSourceId': None, 'ra_decl_Cov': {'declSigma': 0.0002800000074785203, 'ra_decl_Cov': 0.0002899999963119626, 'raSigma': 0.0002800000074785203}, 'x': 112.0999984741211, 'ssObjectId': None, 'diaObjectId': None, 'apFlux': None, 'trailRa': None, 'dipLnL': None, 'snr': 41.099998474121094, 'totFluxErr': None, 'dipMeanFlux': None, 'extendedness': None, 'spuriousness': None, 'ps_Cov': None, 'iyyPSF': None, 'trail_Cov': None, 'psRa': None, 'ccdVisitId': 111111, 'dipChi2': None, 'fpBkgdErr': None, 'trailLength': None, 'ixyPSF': None, 'dipNdata': None, 'apFluxErr': None, 'diffFluxErr': None, 'midPointTai': 1480360995.0, 'diffFlux': None, 'trailFlux': None, 'dipFluxDiff': None, 'psNdata': None, 'psFlux': 1241.0, 'ixy': None}, {'x_y_Cov': {'x_y_Cov': 1.2000000476837158, 'ySigma': 1.100000023841858, 'xSigma': 1.2000000476837158}, 'iyy': None, 'trailDecl': None, 'decl': 0.126243049656, 'dip_Cov': None, 'psDecl': None, 'dipLength': None, 'fpBkgd': None, 'filterName': 'r', 'trailAngle': None, 'totFlux': None, 'ra': 351.570546978, 'diaSourceId': 281323062375219199, 'trailChi2': None, 'trailNdata': None, 'flags': 0, 'dipDecl': None, 'psChi2': None, 'i_cov': None, 'ixx': None, 'psLnL': None, 'ixxPSF': None, 'trailLnL': None, 'dipRa': None, 'dipAngle': None, 'y': 121.0999984741211, 'parentDiaSourceId': None, 'ra_decl_Cov': {'declSigma': 0.0002800000074785203, 'ra_decl_Cov': 0.0002899999963119626, 'raSigma': 0.0002800000074785203}, 'x': 112.0999984741211, 'ssObjectId': None, 'diaObjectId': None, 'apFlux': None, 'trailRa': None, 'dipLnL': None, 'snr': 41.099998474121094, 'totFluxErr': None, 'dipMeanFlux': None, 'extendedness': None, 'spuriousness': None, 'ps_Cov': None, 'iyyPSF': None, 'trail_Cov': None, 'psRa': None, 'ccdVisitId': 111111, 'dipChi2': None, 'fpBkgdErr': None, 'trailLength': None, 'ixyPSF': None, 'dipNdata': None, 'apFluxErr': None, 'diffFluxErr': None, 'midPointTai': 1480360995.0, 'diffFlux': None, 'trailFlux': None, 'dipFluxDiff': None, 'psNdata': None, 'psFlux': 1241.0, 'ixy': None}], 'l1dbId': 222222222, 'diaObject': {'iFPFluxMeanErr': None, 'uFPFluxSigma': None, 'nearbyObj1Dist': None, 'uPSFluxChi2': None, 'decl': 0.126243049656, 'yFPFluxMeanErr': None, 'zPSFluxChi2': None, 'pmDecl': 0.00014000000373926014, 'yFPFluxMean': None, 'nearbyObj1LnP': None, 'pmParallaxChi2': 0.00013000000035390258, 'pmParallaxLnL': 0.00013000000035390258, 'rFPFluxMeanErr': None, 'yPSFluxMeanErr': None, 'rPSFluxMean': None, 'ra': 351.570546978, 'gFPFluxMean': None, 'gPSFluxNdata': None, 'rPSFluxChi2': None, 'uLcPeriodic': None, 'yPSFluxNdata': None, 'iPSFluxSigma': None, 'zFPFluxMeanErr': None, 'iPSFluxChi2': None, 'rLcPeriodic': None, 'pm_parallax_Cov': {'pmDecl_parallax_Cov': 0.00013000000035390258, 'pmRa_pmDecl_Cov': 0.00013000000035390258, 'pmRa_parallax_Cov': 0.00013000000035390258, 'pmDeclSigma': 0.00013000000035390258, 'parallaxSigma': 0.00013000000035390258, 'pmRaSigma': 0.00013000000035390258}, 'yPSFluxMean': None, 'ra_decl_Cov': {'declSigma': 0.0002800000074785203, 'ra_decl_Cov': 0.0002899999963119626, 'raSigma': 0.0002800000074785203}, 'nearbyObj2Dist': None, 'gPSFluxMean': None, 'uPSFluxMeanErr': None, 'gPSFluxMeanErr': None, 'rPSFluxMeanErr': None, 'zLcPeriodic': None, 'nearbyObj3': None, 'gFPFluxMeanErr': None, 'zPSFluxNdata': None, 'zPSFluxSigma': None, 'iLcPeriodic': None, 'nearbyObj3Dist': None, 'yFPFluxSigma': None, 'uPSFluxNdata': None, 'yPSFluxSigma': None, 'zPSFluxMean': None, 'uPSFluxMean': None, 'zLcNonPeriodic': None, 'radecTai': 1480360995.0, 'uPSFluxSigma': None, 'gPSFluxSigma': None, 'zFPFluxMean': None, 'iPSFluxNdata': None, 'iPSFluxMean': None, 'flags': 0, 'uFPFluxMeanErr': None, 'yLcPeriodic': None, 'iPSFluxMeanErr': None, 'rLcNonPeriodic': None, 'uLcNonPeriodic': None, 'nearbyObj2': None, 'rPSFluxNdata': None, 'gLcNonPeriodic': None, 'pmRa': 0.00013000000035390258, 'nearbyObj3LnP': None, 'pmParallaxNdata': 1214, 'nearbyObj2LnP': None, 'rPSFluxSigma': None, 'gLcPeriodic': None, 'diaObjectId': 281323062375219201, 'gFPFluxSigma': None, 'nearbyObj1': None, 'rFPFluxSigma': None, 'rFPFluxMean': None, 'zPSFluxMeanErr': None, 'iLcNonPeriodic': None, 'uFPFluxMean': None, 'zFPFluxSigma': None, 'iFPFluxMean': None, 'iFPFluxSigma': None, 'yPSFluxChi2': None, 'yLcNonPeriodic': None, 'parallax': 2.124124050140381, 'gPSFluxChi2': None}}
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'zFPFluxSigma': None, 'iFPFluxMean': None, 'iFPFluxSigma': None, 'yPSFluxChi2': None, 'yLcNonPeriodic': None, 'parallax': 2.124124050140381, 'gPSFluxChi2': None}}
+
+-------------------------------------------
+Time: 2017-04-20 23:55:00
+-------------------------------------------
+1231321321
+1231321321
+1231321321
+1231321321
+1231321321
+1231321321
+1231321321
+1231321321
+1231321321
+1231321321
+
+-------------------------------------------
+Time: 2017-04-20 23:55:00
+-------------------------------------------
+(1231321321, 10)
+
+-------------------------------------------
+Time: 2017-04-20 23:55:10
+-------------------------------------------
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'ssObjectId': None, 'diaObjectId': None, 'apFlux': None, 'trailRa': None, 'dipLnL': None, 'snr': 41.099998474121094, 'totFluxErr': None, 'dipMeanFlux': None, 'extendedness': None, 'spuriousness': None, 'ps_Cov': None, 'iyyPSF': None, 'trail_Cov': None, 'psRa': None, 'ccdVisitId': 111111, 'dipChi2': None, 'fpBkgdErr': None, 'trailLength': None, 'ixyPSF': None, 'dipNdata': None, 'apFluxErr': None, 'diffFluxErr': None, 'midPointTai': 1480360995.0, 'diffFlux': None, 'trailFlux': None, 'dipFluxDiff': None, 'psNdata': None, 'psFlux': 1241.0, 'ixy': None}, {'x_y_Cov': {'x_y_Cov': 1.2000000476837158, 'ySigma': 1.100000023841858, 'xSigma': 1.2000000476837158}, 'iyy': None, 'trailDecl': None, 'decl': 0.126243049656, 'dip_Cov': None, 'psDecl': None, 'dipLength': None, 'fpBkgd': None, 'filterName': 'r', 'trailAngle': None, 'totFlux': None, 'ra': 351.570546978, 'diaSourceId': 281323062375219199, 'trailChi2': None, 'trailNdata': None, 'flags': 0, 'dipDecl': None, 'psChi2': None, 'i_cov': None, 'ixx': None, 'psLnL': None, 'ixxPSF': None, 'trailLnL': None, 'dipRa': None, 'dipAngle': None, 'y': 121.0999984741211, 'parentDiaSourceId': None, 'ra_decl_Cov': {'declSigma': 0.0002800000074785203, 'ra_decl_Cov': 0.0002899999963119626, 'raSigma': 0.0002800000074785203}, 'x': 112.0999984741211, 'ssObjectId': None, 'diaObjectId': None, 'apFlux': None, 'trailRa': None, 'dipLnL': None, 'snr': 41.099998474121094, 'totFluxErr': None, 'dipMeanFlux': None, 'extendedness': None, 'spuriousness': None, 'ps_Cov': None, 'iyyPSF': None, 'trail_Cov': None, 'psRa': None, 'ccdVisitId': 111111, 'dipChi2': None, 'fpBkgdErr': None, 'trailLength': None, 'ixyPSF': None, 'dipNdata': None, 'apFluxErr': None, 'diffFluxErr': None, 'midPointTai': 1480360995.0, 'diffFlux': None, 'trailFlux': None, 'dipFluxDiff': None, 'psNdata': None, 'psFlux': 1241.0, 'ixy': None}], 'l1dbId': 222222222, 'diaObject': {'iFPFluxMeanErr': None, 'uFPFluxSigma': None, 'nearbyObj1Dist': None, 'uPSFluxChi2': None, 'decl': 0.126243049656, 'yFPFluxMeanErr': None, 'zPSFluxChi2': None, 'pmDecl': 0.00014000000373926014, 'yFPFluxMean': None, 'nearbyObj1LnP': None, 'pmParallaxChi2': 0.00013000000035390258, 'pmParallaxLnL': 0.00013000000035390258, 'rFPFluxMeanErr': None, 'yPSFluxMeanErr': None, 'rPSFluxMean': None, 'ra': 351.570546978, 'gFPFluxMean': None, 'gPSFluxNdata': None, 'rPSFluxChi2': None, 'uLcPeriodic': None, 'yPSFluxNdata': None, 'iPSFluxSigma': None, 'zFPFluxMeanErr': None, 'iPSFluxChi2': None, 'rLcPeriodic': None, 'pm_parallax_Cov': {'pmDecl_parallax_Cov': 0.00013000000035390258, 'pmRa_pmDecl_Cov': 0.00013000000035390258, 'pmRa_parallax_Cov': 0.00013000000035390258, 'pmDeclSigma': 0.00013000000035390258, 'parallaxSigma': 0.00013000000035390258, 'pmRaSigma': 0.00013000000035390258}, 'yPSFluxMean': None, 'ra_decl_Cov': {'declSigma': 0.0002800000074785203, 'ra_decl_Cov': 0.0002899999963119626, 'raSigma': 0.0002800000074785203}, 'nearbyObj2Dist': None, 'gPSFluxMean': None, 'uPSFluxMeanErr': None, 'gPSFluxMeanErr': None, 'rPSFluxMeanErr': None, 'zLcPeriodic': None, 'nearbyObj3': None, 'gFPFluxMeanErr': None, 'zPSFluxNdata': None, 'zPSFluxSigma': None, 'iLcPeriodic': None, 'nearbyObj3Dist': None, 'yFPFluxSigma': None, 'uPSFluxNdata': None, 'yPSFluxSigma': None, 'zPSFluxMean': None, 'uPSFluxMean': None, 'zLcNonPeriodic': None, 'radecTai': 1480360995.0, 'uPSFluxSigma': None, 'gPSFluxSigma': None, 'zFPFluxMean': None, 'iPSFluxNdata': None, 'iPSFluxMean': None, 'flags': 0, 'uFPFluxMeanErr': None, 'yLcPeriodic': None, 'iPSFluxMeanErr': None, 'rLcNonPeriodic': None, 'uLcNonPeriodic': None, 'nearbyObj2': None, 'rPSFluxNdata': None, 'gLcNonPeriodic': None, 'pmRa': 0.00013000000035390258, 'nearbyObj3LnP': None, 'pmParallaxNdata': 1214, 'nearbyObj2LnP': None, 'rPSFluxSigma': None, 'gLcPeriodic': None, 'diaObjectId': 281323062375219201, 'gFPFluxSigma': None, 'nearbyObj1': None, 'rFPFluxSigma': None, 'rFPFluxMean': None, 'zPSFluxMeanErr': None, 'iLcNonPeriodic': None, 'uFPFluxMean': None, 'zFPFluxSigma': None, 'iFPFluxMean': None, 'iFPFluxSigma': None, 'yPSFluxChi2': None, 'yLcNonPeriodic': None, 'parallax': 2.124124050140381, 'gPSFluxChi2': None}}
+
+-------------------------------------------
+Time: 2017-04-20 23:55:10
+-------------------------------------------
+1231321321
+1231321321
+1231321321
+1231321321
+1231321321
+1231321321
+1231321321
+1231321321
+1231321321
+1231321321
+
+-------------------------------------------
+Time: 2017-04-20 23:55:10
+-------------------------------------------
+(1231321321, 10)
+
+-------------------------------------------
+Time: 2017-04-20 23:55:20
+-------------------------------------------
+
+-------------------------------------------
+Time: 2017-04-20 23:55:20
+-------------------------------------------
+
+-------------------------------------------
+Time: 2017-04-20 23:55:20
+-------------------------------------------
+
+
+
+
+ +
+
+ +
+
+---------------------------------------------------------------------------
+KeyboardInterrupt                         Traceback (most recent call last)
+<ipython-input-15-d970cfd6a21f> in <module>()
+      1 ssc.start()
+----> 2 ssc.awaitTermination()
+
+/usr/local/spark/python/pyspark/streaming/context.py in awaitTermination(self, timeout)
+    204         """
+    205         if timeout is None:
+--> 206             self._jssc.awaitTermination()
+    207         else:
+    208             self._jssc.awaitTerminationOrTimeout(int(timeout * 1000))
+
+/usr/local/spark/python/lib/py4j-0.10.4-src.zip/py4j/java_gateway.py in __call__(self, *args)
+   1129             proto.END_COMMAND_PART
+   1130 
+-> 1131         answer = self.gateway_client.send_command(command)
+   1132         return_value = get_return_value(
+   1133             answer, self.gateway_client, self.target_id, self.name)
+
+/usr/local/spark/python/lib/py4j-0.10.4-src.zip/py4j/java_gateway.py in send_command(self, command, retry, binary)
+    881         connection = self._get_connection()
+    882         try:
+--> 883             response = connection.send_command(command)
+    884             if binary:
+    885                 return response, self._create_connection_guard(connection)
+
+/usr/local/spark/python/lib/py4j-0.10.4-src.zip/py4j/java_gateway.py in send_command(self, command)
+   1026 
+   1027         try:
+-> 1028             answer = smart_decode(self.stream.readline()[:-1])
+   1029             logger.debug("Answer received: {0}".format(answer))
+   1030             if answer.startswith(proto.RETURN_MESSAGE):
+
+/opt/conda/lib/python3.5/socket.py in readinto(self, b)
+    573         while True:
+    574             try:
+--> 575                 return self._sock.recv_into(b)
+    576             except timeout:
+    577                 self._timeout_occurred = True
+
+KeyboardInterrupt:
+
+
+ +
+
+ +
+
+
+
In [16]:
+
+
+
sc.stop()
+
+ +
+
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+ +
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+
In [17]:
+
+
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ssc.stop()
+
+ +
+
+
+ +
+
+
+ + + + + + diff --git a/notebooks/html/01-spark-streaming-kafka.html b/notebooks/html/01-spark-streaming-kafka.html new file mode 100644 index 0000000..354caa4 --- /dev/null +++ b/notebooks/html/01-spark-streaming-kafka.html @@ -0,0 +1,12185 @@ + + + +01-spark-streaming-kafka + + + + + + + + + + + + + + + + + + + +
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+

Spark Streaming from Kafka

Example of using Spark to connect to Kafka and using Spark Streaming to process a Kafka stream of Python 'dict' objects.

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+
+

Notes

Useful references.

+

https://www.rittmanmead.com/blog/2017/01/getting-started-with-spark-streaming-with-python-and-kafka/

+

https://spark.apache.org/docs/2.1.0/streaming-kafka-0-8-integration.html

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+
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+
+

Prep environment

Need some packages to talk to Kafka.

+ +
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+
In [1]:
+
+
+
import os
+os.environ['PYSPARK_SUBMIT_ARGS'] = '--packages org.apache.spark:spark-streaming-kafka-0-8_2.11:2.1.0,org.apache.spark:spark-sql-kafka-0-10_2.11:2.1.0,com.databricks:spark-avro_2.11:3.2.0 pyspark-shell'
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In [2]:
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from ast import literal_eval
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In [3]:
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from pyspark import SparkContext
+from pyspark.streaming import StreamingContext
+from pyspark.streaming.kafka import KafkaUtils
+
+# define the update function
+def updateTotalCount(currentCount, countState):
+    if countState is None:
+       countState = 0
+    return sum(currentCount, countState)
+
+# create spark and streaming contexts
+sc = SparkContext("local[*]", "KafkaDirectStream")
+ssc = StreamingContext(sc, 10)
+
+# defining the checkpoint directory
+ssc.checkpoint("/tmp")
+
+ +
+
+
+ +
+
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+
+

Start a Kafka stream for Spark to subscribe

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+

With lsst-dm/alert_stream, in an external shell:

+

docker run -it --network=alertstream_default alert_stream python bin/sendAlertStream.py my-stream 10 --no-stamps --encode-off

+

docker run -it --network=alertstream_default alert_stream python bin/sendAlertStream.py my-stream 10 --no-stamps --encode-off

+ +
+
+
+
+
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+
+

Create output for Spark to print

kafkaStream is the raw dstream of Spark tuples.

+

alert_dstream applies a 'filter' that converts to the raw alert stream.

+

alertId_dstream applies a 'filter' that just grabs alertId's.

+

alertId_counts does a count of the events in alertId_dstream for the configured window (10 seconds).

+ +
+
+
+
+
+
In [4]:
+
+
+
kafkaStream = KafkaUtils.createDirectStream(ssc, ['my-stream'], {'bootstrap.servers': 'kafka:9092',
+            'auto.offset.reset': 'smallest', 'group.id': 'spark-group' })  
+
+kafkaStream.pprint()
+
+ +
+
+
+ +
+
+
+
In [5]:
+
+
+
alert_dstream = kafkaStream.map(lambda alert: literal_eval(alert[1]))
+alert_dstream.pprint()
+
+ +
+
+
+ +
+
+
+
In [6]:
+
+
+
def filter_alertId(alert):
+    return alert['alertId']
+
+ +
+
+
+ +
+
+
+
In [7]:
+
+
+
alertId_dstream = alert_dstream.map(filter_alertId)
+alertId_dstream.pprint()
+
+ +
+
+
+ +
+
+
+
In [8]:
+
+
+
alertId_counts = alertId_dstream.countByValue()
+alertId_counts.pprint()
+
+ +
+
+
+ +
+
+
+
+
+
+

Start the streaming context

Output pprints of the streams above appear.

+ +
+
+
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+
+
In [9]:
+
+
+
ssc.start()
+ssc.awaitTermination()
+
+ +
+
+
+ +
+
+ + +
+
+ +
+
-------------------------------------------
+Time: 2017-04-20 23:59:10
+-------------------------------------------
+(None, "{'alertId': 1231321321, 'l1dbId': 222222222, 'diaSource': {'diaSourceId': 281323062375219200, 'ccdVisitId': 111111, 'midPointTai': 1480360995, 'filterName': 'r', 'ra': 351.570546978, 'decl': 0.126243049656, 'ra_decl_Cov': {'raSigma': 0.00028, 'declSigma': 0.00028, 'ra_decl_Cov': 0.00029}, 'x': 112.1, 'y': 121.1, 'x_y_Cov': {'xSigma': 1.2, 'ySigma': 1.1, 'x_y_Cov': 1.2}, 'snr': 41.1, 'psFlux': 1241.0, 'flags': 0}, 'prv_diaSources': [{'diaSourceId': 281323062375219198, 'ccdVisitId': 111111, 'midPointTai': 1480360995, 'filterName': 'r', 'ra': 351.570546978, 'decl': 0.126243049656, 'ra_decl_Cov': {'raSigma': 0.00028, 'declSigma': 0.00028, 'ra_decl_Cov': 0.00029}, 'x': 112.1, 'y': 121.1, 'x_y_Cov': {'xSigma': 1.2, 'ySigma': 1.1, 'x_y_Cov': 1.2}, 'snr': 41.1, 'psFlux': 1241.0, 'flags': 0}, {'diaSourceId': 281323062375219199, 'ccdVisitId': 111111, 'midPointTai': 1480360995, 'filterName': 'r', 'ra': 351.570546978, 'decl': 0.126243049656, 'ra_decl_Cov': {'raSigma': 0.00028, 'declSigma': 0.00028, 'ra_decl_Cov': 0.00029}, 'x': 112.1, 'y': 121.1, 'x_y_Cov': {'xSigma': 1.2, 'ySigma': 1.1, 'x_y_Cov': 1.2}, 'snr': 41.1, 'psFlux': 1241.0, 'flags': 0}], 'diaObject': {'diaObjectId': 281323062375219201, 'ra': 351.570546978, 'decl': 0.126243049656, 'ra_decl_Cov': {'raSigma': 0.00028, 'declSigma': 0.00028, 'ra_decl_Cov': 0.00029}, 'radecTai': 1480360995, 'pmRa': 0.00013, 'pmDecl': 0.00014, 'parallax': 2.124124, 'pm_parallax_Cov': {'pmRaSigma': 0.00013, 'pmDeclSigma': 0.00013, 'parallaxSigma': 0.00013, 'pmRa_pmDecl_Cov': 0.00013, 'pmRa_parallax_Cov': 0.00013, 'pmDecl_parallax_Cov': 0.00013}, 'pmParallaxLnL': 0.00013, 'pmParallaxChi2': 0.00013, 'pmParallaxNdata': 1214, 'flags': 0}, 'ssObject': {'ssObjectId': 5364546, 'oe': {'q': 6654.14, 'e': 636.121, 'i': 5436.2344, 'lan': 54325.34, 'aop': 344243.3, 'M': 131.1241, 'epoch': 134141}, 'arc': 2.124124, 'orbFitLnL': 1343141.0341, 'orbFitChi2': 1341421.2414, 'orbFitNdata': 1214, 'MOID1': 3141.0, 'MOID2': 23432.423, 'moidLon1': 2143.213, 'moidLon2': 3142.23123, 'uH': 13231.231, 'uHErr': 13213.213, 'uG1': 32131.312, 'uG1Err': 31232.2132, 'uG2': 231.2313, 'uG2Err': 23132.231, 'flags': 0}, 'diaObjectL2': {'diaObjectId': 281323062375219201, 'ra': 351.570546978, 'decl': 0.126243049656, 'ra_decl_Cov': {'raSigma': 0.00028, 'declSigma': 0.00028, 'ra_decl_Cov': 0.00029}, 'radecTai': 1480360995, 'pmRa': 0.00013, 'pmDecl': 0.00014, 'parallax': 2.124124, 'pm_parallax_Cov': {'pmRaSigma': 0.00013, 'pmDeclSigma': 0.00013, 'parallaxSigma': 0.00013, 'pmRa_pmDecl_Cov': 0.00013, 'pmRa_parallax_Cov': 0.00013, 'pmDecl_parallax_Cov': 0.00013}, 'pmParallaxLnL': 0.00013, 'pmParallaxChi2': 0.00013, 'pmParallaxNdata': 1214, 'flags': 0}, 'diaSourcesL2': [{'diaSourceId': 281323062375219198, 'ccdVisitId': 111111, 'midPointTai': 1480360995, 'filterName': 'r', 'ra': 351.570546978, 'decl': 0.126243049656, 'ra_decl_Cov': {'raSigma': 0.00028, 'declSigma': 0.00028, 'ra_decl_Cov': 0.00029}, 'x': 112.1, 'y': 121.1, 'x_y_Cov': {'xSigma': 1.2, 'ySigma': 1.1, 'x_y_Cov': 1.2}, 'snr': 41.1, 'psFlux': 1241.0, 'flags': 0}, {'diaSourceId': 281323062375219199, 'ccdVisitId': 111111, 'midPointTai': 1480360995, 'filterName': 'r', 'ra': 351.570546978, 'decl': 0.126243049656, 'ra_decl_Cov': {'raSigma': 0.00028, 'declSigma': 0.00028, 'ra_decl_Cov': 0.00029}, 'x': 112.1, 'y': 121.1, 'x_y_Cov': {'xSigma': 1.2, 'ySigma': 1.1, 'x_y_Cov': 1.2}, 'snr': 41.1, 'psFlux': 1241.0, 'flags': 0}]}")
+(None, "{'alertId': 1231321321, 'l1dbId': 222222222, 'diaSource': {'diaSourceId': 281323062375219200, 'ccdVisitId': 111111, 'midPointTai': 1480360995, 'filterName': 'r', 'ra': 351.570546978, 'decl': 0.126243049656, 'ra_decl_Cov': {'raSigma': 0.00028, 'declSigma': 0.00028, 'ra_decl_Cov': 0.00029}, 'x': 112.1, 'y': 121.1, 'x_y_Cov': {'xSigma': 1.2, 'ySigma': 1.1, 'x_y_Cov': 1.2}, 'snr': 41.1, 'psFlux': 1241.0, 'flags': 0}, 'prv_diaSources': [{'diaSourceId': 281323062375219198, 'ccdVisitId': 111111, 'midPointTai': 1480360995, 'filterName': 'r', 'ra': 351.570546978, 'decl': 0.126243049656, 'ra_decl_Cov': {'raSigma': 0.00028, 'declSigma': 0.00028, 'ra_decl_Cov': 0.00029}, 'x': 112.1, 'y': 121.1, 'x_y_Cov': {'xSigma': 1.2, 'ySigma': 1.1, 'x_y_Cov': 1.2}, 'snr': 41.1, 'psFlux': 1241.0, 'flags': 0}, {'diaSourceId': 281323062375219199, 'ccdVisitId': 111111, 'midPointTai': 1480360995, 'filterName': 'r', 'ra': 351.570546978, 'decl': 0.126243049656, 'ra_decl_Cov': {'raSigma': 0.00028, 'declSigma': 0.00028, 'ra_decl_Cov': 0.00029}, 'x': 112.1, 'y': 121.1, 'x_y_Cov': {'xSigma': 1.2, 'ySigma': 1.1, 'x_y_Cov': 1.2}, 'snr': 41.1, 'psFlux': 1241.0, 'flags': 0}], 'diaObject': {'diaObjectId': 281323062375219201, 'ra': 351.570546978, 'decl': 0.126243049656, 'ra_decl_Cov': {'raSigma': 0.00028, 'declSigma': 0.00028, 'ra_decl_Cov': 0.00029}, 'radecTai': 1480360995, 'pmRa': 0.00013, 'pmDecl': 0.00014, 'parallax': 2.124124, 'pm_parallax_Cov': {'pmRaSigma': 0.00013, 'pmDeclSigma': 0.00013, 'parallaxSigma': 0.00013, 'pmRa_pmDecl_Cov': 0.00013, 'pmRa_parallax_Cov': 0.00013, 'pmDecl_parallax_Cov': 0.00013}, 'pmParallaxLnL': 0.00013, 'pmParallaxChi2': 0.00013, 'pmParallaxNdata': 1214, 'flags': 0}, 'ssObject': {'ssObjectId': 5364546, 'oe': {'q': 6654.14, 'e': 636.121, 'i': 5436.2344, 'lan': 54325.34, 'aop': 344243.3, 'M': 131.1241, 'epoch': 134141}, 'arc': 2.124124, 'orbFitLnL': 1343141.0341, 'orbFitChi2': 1341421.2414, 'orbFitNdata': 1214, 'MOID1': 3141.0, 'MOID2': 23432.423, 'moidLon1': 2143.213, 'moidLon2': 3142.23123, 'uH': 13231.231, 'uHErr': 13213.213, 'uG1': 32131.312, 'uG1Err': 31232.2132, 'uG2': 231.2313, 'uG2Err': 23132.231, 'flags': 0}, 'diaObjectL2': {'diaObjectId': 281323062375219201, 'ra': 351.570546978, 'decl': 0.126243049656, 'ra_decl_Cov': {'raSigma': 0.00028, 'declSigma': 0.00028, 'ra_decl_Cov': 0.00029}, 'radecTai': 1480360995, 'pmRa': 0.00013, 'pmDecl': 0.00014, 'parallax': 2.124124, 'pm_parallax_Cov': {'pmRaSigma': 0.00013, 'pmDeclSigma': 0.00013, 'parallaxSigma': 0.00013, 'pmRa_pmDecl_Cov': 0.00013, 'pmRa_parallax_Cov': 0.00013, 'pmDecl_parallax_Cov': 0.00013}, 'pmParallaxLnL': 0.00013, 'pmParallaxChi2': 0.00013, 'pmParallaxNdata': 1214, 'flags': 0}, 'diaSourcesL2': [{'diaSourceId': 281323062375219198, 'ccdVisitId': 111111, 'midPointTai': 1480360995, 'filterName': 'r', 'ra': 351.570546978, 'decl': 0.126243049656, 'ra_decl_Cov': {'raSigma': 0.00028, 'declSigma': 0.00028, 'ra_decl_Cov': 0.00029}, 'x': 112.1, 'y': 121.1, 'x_y_Cov': {'xSigma': 1.2, 'ySigma': 1.1, 'x_y_Cov': 1.2}, 'snr': 41.1, 'psFlux': 1241.0, 'flags': 0}, {'diaSourceId': 281323062375219199, 'ccdVisitId': 111111, 'midPointTai': 1480360995, 'filterName': 'r', 'ra': 351.570546978, 'decl': 0.126243049656, 'ra_decl_Cov': {'raSigma': 0.00028, 'declSigma': 0.00028, 'ra_decl_Cov': 0.00029}, 'x': 112.1, 'y': 121.1, 'x_y_Cov': {'xSigma': 1.2, 'ySigma': 1.1, 'x_y_Cov': 1.2}, 'snr': 41.1, 'psFlux': 1241.0, 'flags': 0}]}")
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+(None, "{'alertId': 1231321321, 'l1dbId': 222222222, 'diaSource': {'diaSourceId': 281323062375219200, 'ccdVisitId': 111111, 'midPointTai': 1480360995, 'filterName': 'r', 'ra': 351.570546978, 'decl': 0.126243049656, 'ra_decl_Cov': {'raSigma': 0.00028, 'declSigma': 0.00028, 'ra_decl_Cov': 0.00029}, 'x': 112.1, 'y': 121.1, 'x_y_Cov': {'xSigma': 1.2, 'ySigma': 1.1, 'x_y_Cov': 1.2}, 'snr': 41.1, 'psFlux': 1241.0, 'flags': 0}, 'prv_diaSources': [{'diaSourceId': 281323062375219198, 'ccdVisitId': 111111, 'midPointTai': 1480360995, 'filterName': 'r', 'ra': 351.570546978, 'decl': 0.126243049656, 'ra_decl_Cov': {'raSigma': 0.00028, 'declSigma': 0.00028, 'ra_decl_Cov': 0.00029}, 'x': 112.1, 'y': 121.1, 'x_y_Cov': {'xSigma': 1.2, 'ySigma': 1.1, 'x_y_Cov': 1.2}, 'snr': 41.1, 'psFlux': 1241.0, 'flags': 0}, {'diaSourceId': 281323062375219199, 'ccdVisitId': 111111, 'midPointTai': 1480360995, 'filterName': 'r', 'ra': 351.570546978, 'decl': 0.126243049656, 'ra_decl_Cov': {'raSigma': 0.00028, 'declSigma': 0.00028, 'ra_decl_Cov': 0.00029}, 'x': 112.1, 'y': 121.1, 'x_y_Cov': {'xSigma': 1.2, 'ySigma': 1.1, 'x_y_Cov': 1.2}, 'snr': 41.1, 'psFlux': 1241.0, 'flags': 0}], 'diaObject': {'diaObjectId': 281323062375219201, 'ra': 351.570546978, 'decl': 0.126243049656, 'ra_decl_Cov': {'raSigma': 0.00028, 'declSigma': 0.00028, 'ra_decl_Cov': 0.00029}, 'radecTai': 1480360995, 'pmRa': 0.00013, 'pmDecl': 0.00014, 'parallax': 2.124124, 'pm_parallax_Cov': {'pmRaSigma': 0.00013, 'pmDeclSigma': 0.00013, 'parallaxSigma': 0.00013, 'pmRa_pmDecl_Cov': 0.00013, 'pmRa_parallax_Cov': 0.00013, 'pmDecl_parallax_Cov': 0.00013}, 'pmParallaxLnL': 0.00013, 'pmParallaxChi2': 0.00013, 'pmParallaxNdata': 1214, 'flags': 0}, 'ssObject': {'ssObjectId': 5364546, 'oe': {'q': 6654.14, 'e': 636.121, 'i': 5436.2344, 'lan': 54325.34, 'aop': 344243.3, 'M': 131.1241, 'epoch': 134141}, 'arc': 2.124124, 'orbFitLnL': 1343141.0341, 'orbFitChi2': 1341421.2414, 'orbFitNdata': 1214, 'MOID1': 3141.0, 'MOID2': 23432.423, 'moidLon1': 2143.213, 'moidLon2': 3142.23123, 'uH': 13231.231, 'uHErr': 13213.213, 'uG1': 32131.312, 'uG1Err': 31232.2132, 'uG2': 231.2313, 'uG2Err': 23132.231, 'flags': 0}, 'diaObjectL2': {'diaObjectId': 281323062375219201, 'ra': 351.570546978, 'decl': 0.126243049656, 'ra_decl_Cov': {'raSigma': 0.00028, 'declSigma': 0.00028, 'ra_decl_Cov': 0.00029}, 'radecTai': 1480360995, 'pmRa': 0.00013, 'pmDecl': 0.00014, 'parallax': 2.124124, 'pm_parallax_Cov': {'pmRaSigma': 0.00013, 'pmDeclSigma': 0.00013, 'parallaxSigma': 0.00013, 'pmRa_pmDecl_Cov': 0.00013, 'pmRa_parallax_Cov': 0.00013, 'pmDecl_parallax_Cov': 0.00013}, 'pmParallaxLnL': 0.00013, 'pmParallaxChi2': 0.00013, 'pmParallaxNdata': 1214, 'flags': 0}, 'diaSourcesL2': [{'diaSourceId': 281323062375219198, 'ccdVisitId': 111111, 'midPointTai': 1480360995, 'filterName': 'r', 'ra': 351.570546978, 'decl': 0.126243049656, 'ra_decl_Cov': {'raSigma': 0.00028, 'declSigma': 0.00028, 'ra_decl_Cov': 0.00029}, 'x': 112.1, 'y': 121.1, 'x_y_Cov': {'xSigma': 1.2, 'ySigma': 1.1, 'x_y_Cov': 1.2}, 'snr': 41.1, 'psFlux': 1241.0, 'flags': 0}, {'diaSourceId': 281323062375219199, 'ccdVisitId': 111111, 'midPointTai': 1480360995, 'filterName': 'r', 'ra': 351.570546978, 'decl': 0.126243049656, 'ra_decl_Cov': {'raSigma': 0.00028, 'declSigma': 0.00028, 'ra_decl_Cov': 0.00029}, 'x': 112.1, 'y': 121.1, 'x_y_Cov': {'xSigma': 1.2, 'ySigma': 1.1, 'x_y_Cov': 1.2}, 'snr': 41.1, 'psFlux': 1241.0, 'flags': 0}]}")
+
+-------------------------------------------
+Time: 2017-04-20 23:59:10
+-------------------------------------------
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+
+-------------------------------------------
+Time: 2017-04-20 23:59:10
+-------------------------------------------
+1231321321
+1231321321
+1231321321
+1231321321
+1231321321
+1231321321
+1231321321
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+1231321321
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+
+-------------------------------------------
+Time: 2017-04-20 23:59:10
+-------------------------------------------
+(1231321321, 10)
+
+-------------------------------------------
+Time: 2017-04-20 23:59:20
+-------------------------------------------
+(None, "{'alertId': 1231321321, 'l1dbId': 222222222, 'diaSource': {'diaSourceId': 281323062375219200, 'ccdVisitId': 111111, 'midPointTai': 1480360995, 'filterName': 'r', 'ra': 351.570546978, 'decl': 0.126243049656, 'ra_decl_Cov': {'raSigma': 0.00028, 'declSigma': 0.00028, 'ra_decl_Cov': 0.00029}, 'x': 112.1, 'y': 121.1, 'x_y_Cov': {'xSigma': 1.2, 'ySigma': 1.1, 'x_y_Cov': 1.2}, 'snr': 41.1, 'psFlux': 1241.0, 'flags': 0}, 'prv_diaSources': [{'diaSourceId': 281323062375219198, 'ccdVisitId': 111111, 'midPointTai': 1480360995, 'filterName': 'r', 'ra': 351.570546978, 'decl': 0.126243049656, 'ra_decl_Cov': {'raSigma': 0.00028, 'declSigma': 0.00028, 'ra_decl_Cov': 0.00029}, 'x': 112.1, 'y': 121.1, 'x_y_Cov': {'xSigma': 1.2, 'ySigma': 1.1, 'x_y_Cov': 1.2}, 'snr': 41.1, 'psFlux': 1241.0, 'flags': 0}, {'diaSourceId': 281323062375219199, 'ccdVisitId': 111111, 'midPointTai': 1480360995, 'filterName': 'r', 'ra': 351.570546978, 'decl': 0.126243049656, 'ra_decl_Cov': {'raSigma': 0.00028, 'declSigma': 0.00028, 'ra_decl_Cov': 0.00029}, 'x': 112.1, 'y': 121.1, 'x_y_Cov': {'xSigma': 1.2, 'ySigma': 1.1, 'x_y_Cov': 1.2}, 'snr': 41.1, 'psFlux': 1241.0, 'flags': 0}], 'diaObject': {'diaObjectId': 281323062375219201, 'ra': 351.570546978, 'decl': 0.126243049656, 'ra_decl_Cov': {'raSigma': 0.00028, 'declSigma': 0.00028, 'ra_decl_Cov': 0.00029}, 'radecTai': 1480360995, 'pmRa': 0.00013, 'pmDecl': 0.00014, 'parallax': 2.124124, 'pm_parallax_Cov': {'pmRaSigma': 0.00013, 'pmDeclSigma': 0.00013, 'parallaxSigma': 0.00013, 'pmRa_pmDecl_Cov': 0.00013, 'pmRa_parallax_Cov': 0.00013, 'pmDecl_parallax_Cov': 0.00013}, 'pmParallaxLnL': 0.00013, 'pmParallaxChi2': 0.00013, 'pmParallaxNdata': 1214, 'flags': 0}, 'ssObject': {'ssObjectId': 5364546, 'oe': {'q': 6654.14, 'e': 636.121, 'i': 5436.2344, 'lan': 54325.34, 'aop': 344243.3, 'M': 131.1241, 'epoch': 134141}, 'arc': 2.124124, 'orbFitLnL': 1343141.0341, 'orbFitChi2': 1341421.2414, 'orbFitNdata': 1214, 'MOID1': 3141.0, 'MOID2': 23432.423, 'moidLon1': 2143.213, 'moidLon2': 3142.23123, 'uH': 13231.231, 'uHErr': 13213.213, 'uG1': 32131.312, 'uG1Err': 31232.2132, 'uG2': 231.2313, 'uG2Err': 23132.231, 'flags': 0}, 'diaObjectL2': {'diaObjectId': 281323062375219201, 'ra': 351.570546978, 'decl': 0.126243049656, 'ra_decl_Cov': {'raSigma': 0.00028, 'declSigma': 0.00028, 'ra_decl_Cov': 0.00029}, 'radecTai': 1480360995, 'pmRa': 0.00013, 'pmDecl': 0.00014, 'parallax': 2.124124, 'pm_parallax_Cov': {'pmRaSigma': 0.00013, 'pmDeclSigma': 0.00013, 'parallaxSigma': 0.00013, 'pmRa_pmDecl_Cov': 0.00013, 'pmRa_parallax_Cov': 0.00013, 'pmDecl_parallax_Cov': 0.00013}, 'pmParallaxLnL': 0.00013, 'pmParallaxChi2': 0.00013, 'pmParallaxNdata': 1214, 'flags': 0}, 'diaSourcesL2': [{'diaSourceId': 281323062375219198, 'ccdVisitId': 111111, 'midPointTai': 1480360995, 'filterName': 'r', 'ra': 351.570546978, 'decl': 0.126243049656, 'ra_decl_Cov': {'raSigma': 0.00028, 'declSigma': 0.00028, 'ra_decl_Cov': 0.00029}, 'x': 112.1, 'y': 121.1, 'x_y_Cov': {'xSigma': 1.2, 'ySigma': 1.1, 'x_y_Cov': 1.2}, 'snr': 41.1, 'psFlux': 1241.0, 'flags': 0}, {'diaSourceId': 281323062375219199, 'ccdVisitId': 111111, 'midPointTai': 1480360995, 'filterName': 'r', 'ra': 351.570546978, 'decl': 0.126243049656, 'ra_decl_Cov': {'raSigma': 0.00028, 'declSigma': 0.00028, 'ra_decl_Cov': 0.00029}, 'x': 112.1, 'y': 121.1, 'x_y_Cov': {'xSigma': 1.2, 'ySigma': 1.1, 'x_y_Cov': 1.2}, 'snr': 41.1, 'psFlux': 1241.0, 'flags': 0}]}")
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+
+-------------------------------------------
+Time: 2017-04-20 23:59:20
+-------------------------------------------
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+{'alertId': 1231321321, 'l1dbId': 222222222, 'prv_diaSources': [{'diaSourceId': 281323062375219198, 'psFlux': 1241.0, 'ra': 351.570546978, 'x_y_Cov': {'x_y_Cov': 1.2, 'xSigma': 1.2, 'ySigma': 1.1}, 'decl': 0.126243049656, 'x': 112.1, 'y': 121.1, 'midPointTai': 1480360995, 'filterName': 'r', 'flags': 0, 'ccdVisitId': 111111, 'snr': 41.1, 'ra_decl_Cov': {'ra_decl_Cov': 0.00029, 'declSigma': 0.00028, 'raSigma': 0.00028}}, {'diaSourceId': 281323062375219199, 'psFlux': 1241.0, 'ra': 351.570546978, 'x_y_Cov': {'x_y_Cov': 1.2, 'xSigma': 1.2, 'ySigma': 1.1}, 'decl': 0.126243049656, 'x': 112.1, 'y': 121.1, 'midPointTai': 1480360995, 'filterName': 'r', 'flags': 0, 'ccdVisitId': 111111, 'snr': 41.1, 'ra_decl_Cov': {'ra_decl_Cov': 0.00029, 'declSigma': 0.00028, 'raSigma': 0.00028}}], 'diaObjectL2': {'diaObjectId': 281323062375219201, 'pmParallaxNdata': 1214, 'ra_decl_Cov': {'ra_decl_Cov': 0.00029, 'declSigma': 0.00028, 'raSigma': 0.00028}, 'pmRa': 0.00013, 'pmDecl': 0.00014, 'pmParallaxChi2': 0.00013, 'ra': 351.570546978, 'radecTai': 1480360995, 'pmParallaxLnL': 0.00013, 'decl': 0.126243049656, 'flags': 0, 'pm_parallax_Cov': {'parallaxSigma': 0.00013, 'pmRaSigma': 0.00013, 'pmRa_parallax_Cov': 0.00013, 'pmDeclSigma': 0.00013, 'pmRa_pmDecl_Cov': 0.00013, 'pmDecl_parallax_Cov': 0.00013}, 'parallax': 2.124124}, 'ssObject': {'orbFitLnL': 1343141.0341, 'uHErr': 13213.213, 'MOID2': 23432.423, 'ssObjectId': 5364546, 'orbFitChi2': 1341421.2414, 'moidLon1': 2143.213, 'orbFitNdata': 1214, 'uG1Err': 31232.2132, 'uG2Err': 23132.231, 'uG1': 32131.312, 'oe': {'epoch': 134141, 'lan': 54325.34, 'i': 5436.2344, 'aop': 344243.3, 'e': 636.121, 'M': 131.1241, 'q': 6654.14}, 'arc': 2.124124, 'MOID1': 3141.0, 'uH': 13231.231, 'uG2': 231.2313, 'flags': 0, 'moidLon2': 3142.23123}, 'diaSource': {'diaSourceId': 281323062375219200, 'psFlux': 1241.0, 'ra': 351.570546978, 'x_y_Cov': {'x_y_Cov': 1.2, 'xSigma': 1.2, 'ySigma': 1.1}, 'decl': 0.126243049656, 'x': 112.1, 'y': 121.1, 'midPointTai': 1480360995, 'filterName': 'r', 'flags': 0, 'ccdVisitId': 111111, 'snr': 41.1, 'ra_decl_Cov': {'ra_decl_Cov': 0.00029, 'declSigma': 0.00028, 'raSigma': 0.00028}}, 'diaObject': {'diaObjectId': 281323062375219201, 'pmParallaxNdata': 1214, 'ra_decl_Cov': {'ra_decl_Cov': 0.00029, 'declSigma': 0.00028, 'raSigma': 0.00028}, 'pmRa': 0.00013, 'pmDecl': 0.00014, 'pmParallaxChi2': 0.00013, 'ra': 351.570546978, 'radecTai': 1480360995, 'pmParallaxLnL': 0.00013, 'decl': 0.126243049656, 'flags': 0, 'pm_parallax_Cov': {'parallaxSigma': 0.00013, 'pmRaSigma': 0.00013, 'pmRa_parallax_Cov': 0.00013, 'pmDeclSigma': 0.00013, 'pmRa_pmDecl_Cov': 0.00013, 'pmDecl_parallax_Cov': 0.00013}, 'parallax': 2.124124}, 'diaSourcesL2': [{'diaSourceId': 281323062375219198, 'psFlux': 1241.0, 'ra': 351.570546978, 'x_y_Cov': {'x_y_Cov': 1.2, 'xSigma': 1.2, 'ySigma': 1.1}, 'decl': 0.126243049656, 'x': 112.1, 'y': 121.1, 'midPointTai': 1480360995, 'filterName': 'r', 'flags': 0, 'ccdVisitId': 111111, 'snr': 41.1, 'ra_decl_Cov': {'ra_decl_Cov': 0.00029, 'declSigma': 0.00028, 'raSigma': 0.00028}}, {'diaSourceId': 281323062375219199, 'psFlux': 1241.0, 'ra': 351.570546978, 'x_y_Cov': {'x_y_Cov': 1.2, 'xSigma': 1.2, 'ySigma': 1.1}, 'decl': 0.126243049656, 'x': 112.1, 'y': 121.1, 'midPointTai': 1480360995, 'filterName': 'r', 'flags': 0, 'ccdVisitId': 111111, 'snr': 41.1, 'ra_decl_Cov': {'ra_decl_Cov': 0.00029, 'declSigma': 0.00028, 'raSigma': 0.00028}}]}
+{'alertId': 1231321321, 'l1dbId': 222222222, 'prv_diaSources': [{'diaSourceId': 281323062375219198, 'psFlux': 1241.0, 'ra': 351.570546978, 'x_y_Cov': {'x_y_Cov': 1.2, 'xSigma': 1.2, 'ySigma': 1.1}, 'decl': 0.126243049656, 'x': 112.1, 'y': 121.1, 'midPointTai': 1480360995, 'filterName': 'r', 'flags': 0, 'ccdVisitId': 111111, 'snr': 41.1, 'ra_decl_Cov': {'ra_decl_Cov': 0.00029, 'declSigma': 0.00028, 'raSigma': 0.00028}}, {'diaSourceId': 281323062375219199, 'psFlux': 1241.0, 'ra': 351.570546978, 'x_y_Cov': {'x_y_Cov': 1.2, 'xSigma': 1.2, 'ySigma': 1.1}, 'decl': 0.126243049656, 'x': 112.1, 'y': 121.1, 'midPointTai': 1480360995, 'filterName': 'r', 'flags': 0, 'ccdVisitId': 111111, 'snr': 41.1, 'ra_decl_Cov': {'ra_decl_Cov': 0.00029, 'declSigma': 0.00028, 'raSigma': 0.00028}}], 'diaObjectL2': {'diaObjectId': 281323062375219201, 'pmParallaxNdata': 1214, 'ra_decl_Cov': {'ra_decl_Cov': 0.00029, 'declSigma': 0.00028, 'raSigma': 0.00028}, 'pmRa': 0.00013, 'pmDecl': 0.00014, 'pmParallaxChi2': 0.00013, 'ra': 351.570546978, 'radecTai': 1480360995, 'pmParallaxLnL': 0.00013, 'decl': 0.126243049656, 'flags': 0, 'pm_parallax_Cov': {'parallaxSigma': 0.00013, 'pmRaSigma': 0.00013, 'pmRa_parallax_Cov': 0.00013, 'pmDeclSigma': 0.00013, 'pmRa_pmDecl_Cov': 0.00013, 'pmDecl_parallax_Cov': 0.00013}, 'parallax': 2.124124}, 'ssObject': {'orbFitLnL': 1343141.0341, 'uHErr': 13213.213, 'MOID2': 23432.423, 'ssObjectId': 5364546, 'orbFitChi2': 1341421.2414, 'moidLon1': 2143.213, 'orbFitNdata': 1214, 'uG1Err': 31232.2132, 'uG2Err': 23132.231, 'uG1': 32131.312, 'oe': {'epoch': 134141, 'lan': 54325.34, 'i': 5436.2344, 'aop': 344243.3, 'e': 636.121, 'M': 131.1241, 'q': 6654.14}, 'arc': 2.124124, 'MOID1': 3141.0, 'uH': 13231.231, 'uG2': 231.2313, 'flags': 0, 'moidLon2': 3142.23123}, 'diaSource': {'diaSourceId': 281323062375219200, 'psFlux': 1241.0, 'ra': 351.570546978, 'x_y_Cov': {'x_y_Cov': 1.2, 'xSigma': 1.2, 'ySigma': 1.1}, 'decl': 0.126243049656, 'x': 112.1, 'y': 121.1, 'midPointTai': 1480360995, 'filterName': 'r', 'flags': 0, 'ccdVisitId': 111111, 'snr': 41.1, 'ra_decl_Cov': {'ra_decl_Cov': 0.00029, 'declSigma': 0.00028, 'raSigma': 0.00028}}, 'diaObject': {'diaObjectId': 281323062375219201, 'pmParallaxNdata': 1214, 'ra_decl_Cov': {'ra_decl_Cov': 0.00029, 'declSigma': 0.00028, 'raSigma': 0.00028}, 'pmRa': 0.00013, 'pmDecl': 0.00014, 'pmParallaxChi2': 0.00013, 'ra': 351.570546978, 'radecTai': 1480360995, 'pmParallaxLnL': 0.00013, 'decl': 0.126243049656, 'flags': 0, 'pm_parallax_Cov': {'parallaxSigma': 0.00013, 'pmRaSigma': 0.00013, 'pmRa_parallax_Cov': 0.00013, 'pmDeclSigma': 0.00013, 'pmRa_pmDecl_Cov': 0.00013, 'pmDecl_parallax_Cov': 0.00013}, 'parallax': 2.124124}, 'diaSourcesL2': [{'diaSourceId': 281323062375219198, 'psFlux': 1241.0, 'ra': 351.570546978, 'x_y_Cov': {'x_y_Cov': 1.2, 'xSigma': 1.2, 'ySigma': 1.1}, 'decl': 0.126243049656, 'x': 112.1, 'y': 121.1, 'midPointTai': 1480360995, 'filterName': 'r', 'flags': 0, 'ccdVisitId': 111111, 'snr': 41.1, 'ra_decl_Cov': {'ra_decl_Cov': 0.00029, 'declSigma': 0.00028, 'raSigma': 0.00028}}, {'diaSourceId': 281323062375219199, 'psFlux': 1241.0, 'ra': 351.570546978, 'x_y_Cov': {'x_y_Cov': 1.2, 'xSigma': 1.2, 'ySigma': 1.1}, 'decl': 0.126243049656, 'x': 112.1, 'y': 121.1, 'midPointTai': 1480360995, 'filterName': 'r', 'flags': 0, 'ccdVisitId': 111111, 'snr': 41.1, 'ra_decl_Cov': {'ra_decl_Cov': 0.00029, 'declSigma': 0.00028, 'raSigma': 0.00028}}]}
+
+-------------------------------------------
+Time: 2017-04-20 23:59:20
+-------------------------------------------
+1231321321
+1231321321
+1231321321
+1231321321
+1231321321
+1231321321
+1231321321
+1231321321
+1231321321
+1231321321
+
+-------------------------------------------
+Time: 2017-04-20 23:59:20
+-------------------------------------------
+(1231321321, 10)
+
+
+
+
+ +
+
+ +
+
+---------------------------------------------------------------------------
+KeyboardInterrupt                         Traceback (most recent call last)
+<ipython-input-9-d970cfd6a21f> in <module>()
+      1 ssc.start()
+----> 2 ssc.awaitTermination()
+
+/usr/local/spark/python/pyspark/streaming/context.py in awaitTermination(self, timeout)
+    204         """
+    205         if timeout is None:
+--> 206             self._jssc.awaitTermination()
+    207         else:
+    208             self._jssc.awaitTerminationOrTimeout(int(timeout * 1000))
+
+/usr/local/spark/python/lib/py4j-0.10.4-src.zip/py4j/java_gateway.py in __call__(self, *args)
+   1129             proto.END_COMMAND_PART
+   1130 
+-> 1131         answer = self.gateway_client.send_command(command)
+   1132         return_value = get_return_value(
+   1133             answer, self.gateway_client, self.target_id, self.name)
+
+/usr/local/spark/python/lib/py4j-0.10.4-src.zip/py4j/java_gateway.py in send_command(self, command, retry, binary)
+    881         connection = self._get_connection()
+    882         try:
+--> 883             response = connection.send_command(command)
+    884             if binary:
+    885                 return response, self._create_connection_guard(connection)
+
+/usr/local/spark/python/lib/py4j-0.10.4-src.zip/py4j/java_gateway.py in send_command(self, command)
+   1026 
+   1027         try:
+-> 1028             answer = smart_decode(self.stream.readline()[:-1])
+   1029             logger.debug("Answer received: {0}".format(answer))
+   1030             if answer.startswith(proto.RETURN_MESSAGE):
+
+/opt/conda/lib/python3.5/socket.py in readinto(self, b)
+    573         while True:
+    574             try:
+--> 575                 return self._sock.recv_into(b)
+    576             except timeout:
+    577                 self._timeout_occurred = True
+
+KeyboardInterrupt:
+
+
+ +
+
+ +
+
+
+
In [10]:
+
+
+
sc.stop()
+
+ +
+
+
+ +
+
+
+
In [11]:
+
+
+
ssc.stop()
+
+ +
+
+
+ +
+
+
+ + + + + +