Change Log

New Functionality

• Added kingdom=all option (with --accurate)

Improvement

• Added Rfam accession dbxref attribute to GFF output

Bug Fix

• Changed pyhmmer min version v0.10.8 to v0.10.9 to fix segmentation faults bug

Change Log

Improvement

• Improve docs & error message for installation

Change Log

New Functionality

• Add accurate option using cmscan(infernal)

Drop Support

• kingdom='mito' is no longer supported

Change Log

Improvement

• Updated HMM profile database (See details here)

Change Log

Improvement

• Fixed evalue results inconsistencies between nhmmer and pyhmmer.nhmmer (#2 thanks @althonos)
• Fixed to be able to read gzipped format file from CLI

Change Log

Improvement

• Added example notebook

Bug Fix

• Fixed to raise error when fasta contains duplication id

First Release

Python implementation of barrnap (Bacterial ribosomal RNA predictor)