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1. scikit-bio/scikit-bio scikit-bio/scikit-bio Public

   scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.

   Python 888 269

2. biocore/mmvec biocore/mmvec Public

   Neural networks for microbe-metabolite interaction analysis

   Python 119 51

3. biocore/songbird biocore/songbird Public

   Vanilla regression methods for microbiome differential abundance analysis

   Python 59 25

4. biocore/gneiss biocore/gneiss Public

   compositional data analysis toolbox

   Jupyter Notebook 56 28

5. flatironinstitute/deepblast flatironinstitute/deepblast Public

   Neural Networks for Protein Sequence Alignment

   Python 114 20

6. flatironinstitute/catvae flatironinstitute/catvae Public

   Categorical Variational Autoencoders

   Jupyter Notebook 22 3