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@siobhon-egan
siobhon-egan committed Aug 24, 2019
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.RData
.Ruserdata
*.Rmd
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*.Rproj
67 changes: 32 additions & 35 deletions README.html
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<script src="site_libs/jquery-1.11.3/jquery.min.js"></script>
<meta name="viewport" content="width=device-width, initial-scale=1" />
<link href="site_libs/bootstrap-3.3.5/css/bootstrap.min.css" rel="stylesheet" />
<link href="site_libs/bootstrap-3.3.5/css/spacelab.min.css" rel="stylesheet" />
<script src="site_libs/bootstrap-3.3.5/js/bootstrap.min.js"></script>
<script src="site_libs/bootstrap-3.3.5/shim/html5shiv.min.js"></script>
<script src="site_libs/bootstrap-3.3.5/shim/respond.min.js"></script>
<script src="site_libs/navigation-1.1/tabsets.js"></script>
<link href="site_libs/highlightjs-9.12.0/default.css" rel="stylesheet" />
<script src="site_libs/highlightjs-9.12.0/highlight.js"></script>

<style type="text/css">code{white-space: pre;}</style>
<style type="text/css">
pre:not([class]) {
background-color: white;
}
</style>
<script type="text/javascript">
if (window.hljs) {
hljs.configure({languages: []});
hljs.initHighlightingOnLoad();
if (document.readyState && document.readyState === "complete") {
window.setTimeout(function() { hljs.initHighlighting(); }, 0);
}
}
</script>



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}
</style>

<link rel="stylesheet" href="styles.css" type="text/css" />



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<style type="text/css">
/* padding for bootstrap navbar */
body {
padding-top: 51px;
padding-top: 52px;
padding-bottom: 40px;
}
/* offset scroll position for anchor links (for fixed navbar) */
.section h1 {
padding-top: 56px;
margin-top: -56px;
padding-top: 57px;
margin-top: -57px;
}
.section h2 {
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}
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}
.dropdown-submenu {
position: relative;
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<span class="icon-bar"></span>
<span class="icon-bar"></span>
</button>
<a class="navbar-brand" href="index.html">Personal Website</a>
<a class="navbar-brand" href="index.html">Siobhon Egan</a>
</div>
<div id="navbar" class="navbar-collapse collapse">
<ul class="nav navbar-nav">
<li>
<a href="index.html">Home</a>
<a href="index.html">
<span class="fa fa-home"></span>

Home
</a>
</li>
<li>
<a href="cv.html">CV</a>
<a href="cv.html">
<span class="fa fa-id-card"></span>

CV
</a>
</li>
<li>
<a href="links.html">Links</a>
<a href="contact.html">
<span class="fa fa-at"></span>

Contact
</a>
</li>
</ul>
<ul class="nav navbar-nav navbar-right">
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<p>personal page</p>
</div>

<p> <font size="2"><font color="purple">Copyright &copy; 2019 Siobhon Egan. </font></font> </p>



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name: "personal-website"
output_dir: "."
navbar:
title: "Personal Website"
title: "Siobhon Egan"
left:
- text: "Home"
icon: fa-home
href: index.html
- text: "CV"
icon: fa-id-card
href: cv.html
- text: "Links"
href: links.html
- text: "Contact"
icon: fa-at
href: contact.html
output:
html_document:
theme: spacelab
highlight: monochrome
include:
after_body: footer.html
css: styles.css


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<script src="site_libs/bootstrap-3.3.5/shim/html5shiv.min.js"></script>
<script src="site_libs/bootstrap-3.3.5/shim/respond.min.js"></script>
<script src="site_libs/navigation-1.1/tabsets.js"></script>
<link href="site_libs/font-awesome-5.1.0/css/all.css" rel="stylesheet" />
<link href="site_libs/font-awesome-5.1.0/css/v4-shims.css" rel="stylesheet" />



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<span class="icon-bar"></span>
<span class="icon-bar"></span>
</button>
<a class="navbar-brand" href="index.html">Personal Website</a>
<a class="navbar-brand" href="index.html">Siobhon Egan</a>
</div>
<div id="navbar" class="navbar-collapse collapse">
<ul class="nav navbar-nav">
<li>
<a href="index.html">Home</a>
<a href="index.html">
<span class="fa fa-home"></span>

Home
</a>
</li>
<li>
<a href="cv.html">CV</a>
<a href="cv.html">
<span class="fa fa-id-card"></span>

CV
</a>
</li>
<li>
<a href="links.html">Links</a>
<a href="contact.html">
<span class="fa fa-at"></span>

Contact
</a>
</li>
</ul>
<ul class="nav navbar-nav navbar-right">
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</div>


<p><a href="mailto:Siobhon.Egan@murdoch.edu.au">Siobhon.Egan@murdoch.edu.au</a></p>
<div class="alert alert-warning">
<p>More information coming soon</p>
</div>
<p><strong>Research</strong></p>
<p><strong>Collaborators</strong></p>
<p><strong>Media links</strong></p>

<p> <font size="2"><font color="purple">Copyright &copy; 2019 Siobhon Egan. </font></font> </p>



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<link href="site_libs/tocify-1.9.1/jquery.tocify.css" rel="stylesheet" />
<script src="site_libs/tocify-1.9.1/jquery.tocify.js"></script>
<script src="site_libs/navigation-1.1/tabsets.js"></script>
<link href="site_libs/font-awesome-5.1.0/css/all.css" rel="stylesheet" />
<link href="site_libs/font-awesome-5.1.0/css/v4-shims.css" rel="stylesheet" />



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<span class="icon-bar"></span>
<span class="icon-bar"></span>
</button>
<a class="navbar-brand" href="index.html">Personal Website</a>
<a class="navbar-brand" href="index.html">Siobhon Egan</a>
</div>
<div id="navbar" class="navbar-collapse collapse">
<ul class="nav navbar-nav">
<li>
<a href="index.html">Home</a>
<a href="index.html">
<span class="fa fa-home"></span>

Home
</a>
</li>
<li>
<a href="cv.html">CV</a>
<a href="cv.html">
<span class="fa fa-id-card"></span>

CV
</a>
</li>
<li>
<a href="links.html">Links</a>
<a href="contact.html">
<span class="fa fa-at"></span>

Contact
</a>
</li>
</ul>
<ul class="nav navbar-nav navbar-right">
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</div>


<p><a href="https://shields.io/"><img src="https://img.shields.io/badge/Siobhon%20Egan-August%202019-%3CCOLOR%3E.svg" alt="Generic badge" /></a></p>
<p><strong>Research interests:</strong> Taxonomy and biology of ticks (Ixodida), Ecology, One Health, Parasitology, Wildlife Biology, Molecular Biology, Infectious Disease, Bioinformatics, Epidemiology.</p>
<div id="education" class="section level1">
<h1>Education</h1>
<p>Murdoch University – Doctor of Philosophy 2018-2021</p>
<ul>
<li>Ecology of ticks and tick-borne diseases in Australia: A One Health approach</li>
<li>Supervisors: Dr. Charlotte Oskam, Prof. Peter Irwin, Prof. Una Ryan, and Prof. Peter Banks (USYD)</li>
<li>Supervisors: Dr. Charlotte Oskam, Prof. Peter Irwin, Prof. Una Ryan, and Prof. Peter Banks.</li>
</ul>
<p>Pawsey Supercomputing Centre/CSIRO – Paid Internship Summer 2017-2018</p>
<ul>
Expand All @@ -419,18 +434,32 @@ <h1>Education</h1>
</div>
<div id="grants-awards" class="section level1">
<h1>Grants &amp; Awards</h1>
<p>Holsworth Wildlife Research Endowment awarded July 2019 Australian Society for Parasitology Conference Travel Grant awarded July 2019 Australian Society for Parasitology Conference Travel Grant awarded September 2018 Holsworth Wildlife Research Endowment awarded June 2018 Research Training Program (RTP) Scholarship 2018-2021 Best poster design 2017 (Combined Biological Sciences Meeting held at University of Western Australia) Myrtle AB Lamb Honours Scholarship awarded March 2017</p>
<p>Holsworth Wildlife Research Endowment awarded July 2019</p>
<p>Australian Society for Parasitology Conference Travel Grant awarded July 2019</p>
<p>Australian Society for Parasitology Conference Travel Grant awarded September 2018</p>
<p>Holsworth Wildlife Research Endowment awarded June 2018</p>
<p>Research Training Program (RTP) Scholarship 2018-2021</p>
<p>Best poster design 2017 at the Combined Biological Sciences Meeting.</p>
<p>Myrtle AB Lamb Honours Scholarship awarded March 2017</p>
</div>
<div id="publications" class="section level1">
<h1>Publications</h1>
<div id="articles" class="section level2">
<h2>Articles</h2>
<p>Evans, M., Egan, S., Irwin, P., and Oskam, C. 2019. Automatic Barcode Gap Discovery reveals large COI intraspecific divergence in Australian Ixodidae. <em>Zootaxa</em> 4652(2). DOI 10.11646/zootaxa.4656.2.13</p>
<p>Irwin, P., Egan, S., Greay, T., and Oskam C. 2018. Bacterial tick-associated infections in Australia: Current studies and future directions. <em>Microbiology Australia</em> 39(4): 200-202. DOI 10.1071/MA18063</p>
<p>Siew-May, L.,Egan, S., Gillet, A., Banks, P. B., Ryan U. M., Irwin, P. J., and Oskam, C. L. 2018. Molecular surveillance of piroplasms in ticks from small and medium-sized urban and peri-urban mammals in Australia. <em>International Journal of Parasitology: Parasites and Wildlife</em> 7(2). DOI 10.1016/j.ijppaw.2018.05.005</p>
<div id="articles" class="section level3">
<h3>Articles</h3>
<p>Evans, M., <strong>Egan, S.</strong>, Irwin, P., and Oskam, C. 2019. Automatic Barcode Gap Discovery reveals large COI intraspecific divergence in Australian Ixodidae. <em>Zootaxa</em> 4652(2). DOI 10.11646/zootaxa.4656.2.13</p>
<p>Irwin, P., <strong>Egan, S.</strong>, Greay, T., and Oskam C. 2018. Bacterial tick-associated infections in Australia: Current studies and future directions. <em>Microbiology Australia</em> 39(4): 200-202. DOI 10.1071/MA18063</p>
<p>Siew-May, L., <strong>Egan, S.</strong>, Gillet, A., Banks, P. B., Ryan U. M., Irwin, P. J., and Oskam, C. L. 2018. Molecular surveillance of piroplasms in ticks from small and medium-sized urban and peri-urban mammals in Australia. <em>International Journal of Parasitology: Parasites and Wildlife</em> 7(2). DOI 10.1016/j.ijppaw.2018.05.005</p>
</div>
<div id="conference-presentations" class="section level2">
<h2>Conference presentations</h2>
<div id="conference-presentations" class="section level3">
<h3>Conference presentations</h3>
<p><strong>Egan, S.</strong>, Fontaine, J., Veber, W., Ruthof, K., Ryan, U., Irwin, P., and Oskam, C. 2019. The ecology of Amblyomma triguttatum triguttatum in Western Australia. <em>Australian Society for Parasitology Annual Conference</em>, Adelaide, South Australia.</p>
<p><strong>Egan, S.</strong>, Evans, M., Irwin, P., and Oskam, C. 2019. Molecular barcoding of Australian hard ticks (Ixodidae). <em>Australian Society for Parasitology Annual Conference</em>, Adelaide, South Australia.</p>
<p><strong>Egan, S.</strong>, Siew-May, L., Gillet, A., Banks, P., Ryan U., Irwin, P., and Oskam, C. 2018. Ticks parasitizing Australian wildlife and surveillance of potential tick-borne pathogens. <em>Australian Society for Parasitology Annual Conference</em>, Melbourne, Victoria</p>
</div>
<div id="poster-presentations" class="section level3">
<h3>Poster presentations</h3>
<p><strong>Egan, S.</strong>, Greay, T., Gofton, A., Ryan U., Irwin, P., and Oskam, C. 2018. What’s in a tick? Meta-analysis of microbial diversity in Australian ticks. <em>Global Microbiome II 2018 (West Coast Microbiome Network)</em>, Perth, Western Australia.</p>
<p><strong>Egan, S.</strong>, Siew-May, L., Gofton, A., Greay, T., Banks, P., Irwin, P., and Oskam, C. 2017. Are bandicoot ticks a reservoir for novel bacteria? <em>Combined Biological Sciences Meeting</em>, Perth, Western Australia.</p>
</div>
</div>
<div id="employment" class="section level1">
Expand All @@ -442,7 +471,7 @@ <h1>Employment</h1>
<h1>Service</h1>
<p>Student Chapter Committee, June 2018-Present Wildlife Disease Association Australiasia</p>
<p>Murdoch University Open Day, July 2019 Parasitology display</p>
<p>Perth Royal Show, September 2017 Life Undercover Display</p>
<p>Perth Royal Show, September 2017 Parasitology Life Undercover Display</p>
<p>Field &amp; Lab Assistant, December 2014-July 2016 Murdoch University, Parasitology Department</p>
<p>Secretary, July 2014-July 2016 Western Australia Wildlife Rehabilitation Council Inc.</p>
<p>Animal attendant, March 2014-July 2015 Little Paws Rescue</p>
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</ul>
<p><strong>Technical skills</strong></p>
<ul>
<li>RStudio - intermediate-advanced • Biology and Ecology modelling programs – PRIMER, SOCPROG • Molecular laboratory techniques – inc. Next Generation Sequencing, Sanger Sequencing, qPCR • Microscopy techniques • Computational Biology – Unix platform • Bioinformatics and phylogenetic analysis (programs include MEGA, Geneious, MEGAN) • Coding languages – Bash (intermediate-advanced), python (intermediate) • Wildlife camera trapping</li>
<li>RStudio - intermediate-advanced knowledge</li>
<li>Biology and Ecology modelling programs – PRIMER, SOCPROG</li>
<li>Molecular laboratory techniques – inc. Next Generation Sequencing, Sanger Sequencing, qPCR</li>
<li>Microscopy techniques</li>
<li>Computational Biology – Unix platform</li>
<li>Bioinformatics and phylogenetic analysis (programs include MEGA, Geneious, MEGAN)</li>
<li>Coding languages – Bash (intermediate-advanced), python (intermediate)</li>
<li>Wildlife camera trapping</li>
</ul>
</div>

<p> <font size="2"><font color="purple">Copyright &copy; 2019 Siobhon Egan. </font></font> </p>


</div>
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<p> <font size="2"><font color="purple">Copyright &copy; 2019 Siobhon Egan. </font></font> </p>
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