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Notes on Cowley (2006) "Scattering factors for the diffraction of electrons by crystalline solids" and references therein #179

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geoffwoollard opened this issue Mar 14, 2024 · 5 comments

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@geoffwoollard
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geoffwoollard commented Mar 14, 2024

Notes on Cowley, J. M. (2006). Scattering factors for the diffraction of electrons by crystalline solids. In International Tables for Crystallography (Vol. C, pp. 259–429). https://www.wiley.com/en-ie/International+Tables+for+Crystallography%2C+Volume+C%3A+Mathematical%2C+Physical+and+Chemical+Tables%2C+3rd+Edition-p-9780470710296

cowley (IUCr Series. International Tables of Crystallography) E. Prince (Ed.) - International Tables for Crystallography Volume C_ Mathematical, physical and chemical tables. C-Wiley (2007) copy.pdf

References therein

  • Peng, L. M., Ren, G., Dudarev, S. L., & Whelan, M. J. (1996). Robust parameterization of elastic and absorptive electron atomic scattering factors. Acta Crystallographica Section A: Foundations of Crystallography, 52(2), 257–276. http://doi.org/10.1107/S0108767395014371
@geoffwoollard
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geoffwoollard commented Mar 14, 2024

Units of s given under Eq 4.3.1.12 on p. 260
Screen Shot 2024-03-14 at 2 09 42 PM

So inverse space. However, the convention for k in Fourier space might have to do with their convention of a Fourier transform, which has 2*pi*i*h*r in the exp (equation 4.3.1.11).
Screen Shot 2024-03-14 at 2 11 16 PM

@geoffwoollard
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geoffwoollard commented Mar 14, 2024

The text clearly states that f^B(s), i.e. "atomic scattering amplitudes" are given in table 4.3.1.1 (neutral atoms) and 4.3.1.2 (ionized atoms).

The X-ray scattering factors, i.e. f_x(s), is related to f^B(s) through the Mott formula (equation 4.3.1.14/15), and are found in a reference. However the Mott equation breaks down at low s, and is not listed in the table.

However the origin (s=0) is a special case and the Mott equation is not used but instead one can find f^B(s) with a simple equation (4.3.1.29).

Screen Shot 2024-03-14 at 3 58 01 PM

The argument of f^B or f_x are is s in both cases, but in the top left corner we see the units in the tables are in sin(theta)/lambda.

Hence looking up the value of 1.0 on the table means 1 = sin(theta) / lambda, and so s = 4*pi*1.

Stated the other direction for a value of s = 4 pi, you use the value of 1.0 on the table.

This should help track down the "missing value of 4 pi"

Screen Shot 2024-03-14 at 2 30 50 PM

@geoffwoollard geoffwoollard changed the title Notes on Cowley (2006) Scattering factors for the diffraction of electrons by crystalline solids Notes on Cowley (2006) Scattering factors for the diffraction of electrons by crystalline solids and references there in Mar 14, 2024
@geoffwoollard geoffwoollard changed the title Notes on Cowley (2006) Scattering factors for the diffraction of electrons by crystalline solids and references there in Notes on Cowley (2006) "Scattering factors for the diffraction of electrons by crystalline solids" and references there in Mar 14, 2024
@geoffwoollard geoffwoollard changed the title Notes on Cowley (2006) "Scattering factors for the diffraction of electrons by crystalline solids" and references there in Notes on Cowley (2006) "Scattering factors for the diffraction of electrons by crystalline solids" and references therein Mar 14, 2024
@geoffwoollard
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geoffwoollard commented Mar 14, 2024

Confusingly, Peng seems to have a different convention of s, where there is no 4 pi

Screen Shot 2024-03-14 at 3 05 40 PM

Later on in equation 17 the variable g = 4 pi s is used

Screen Shot 2024-03-14 at 3 27 00 PM

@geoffwoollard
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There is a relativisitc correction for f^B(s) from the values listed in the tables 4.3.1.1 and 4.3.1.2
Screen Shot 2024-03-14 at 3 59 27 PM

@geoffwoollard
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geoffwoollard commented Mar 14, 2024

Finally, the values of a_i and b_i are listed in 4.3.2.2 (for s up to 2 A^-1) and table 4.3.2.3 (for s up to 6 A^-1).

Note that this is likely very high resolution (depending on the 4 pi factor). Because 2 A^-1 corresponds to 0.5 A, and 6 A^-1 to 1/6 = 0.17 A.

Also, they do not agree over the range [0,2]. This confuses me at first glance. Perhaps the values in table 4.3.2.2 (for s up to 2 A^-1) are "overfit" for this range... or the values in table 4.3.2.3 (for s up to 6 A^-1) are "underfit" for the range [0,2]. Or perhaps when all 5 Gaussians are combined, the curves overlap very closely in the range [0,2].

Screen Shot 2024-03-14 at 4 03 53 PM
Screen Shot 2024-03-14 at 4 04 13 PM

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