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Commits on Oct 21, 2021

• Bump cwltool from 3.1.20211004060744 to 3.1.20211020155521 (DataBiosphere#3866)

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Commits on Oct 20, 2021

• Update addict requirement from <2.3,>=2.2.1 to >=2.2.1,<2.5 (DataBiosphere#3861)

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Commits on Oct 19, 2021

• pyyaml is no longer used (DataBiosphere#3858)

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Commits on Oct 18, 2021

• Issues/3775 coalesce status calls slurm (DataBiosphere#3822)

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Commits on Oct 16, 2021

• Bump cwltest from 2.1.20210626101542 to 2.2.20210901154959 (DataBiosphere#3848)

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• Allow more docker-py versions (DataBiosphere#3860)

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Commits on Oct 14, 2021

• Bump flake8 from 3.8.4 to 4.0.1 (DataBiosphere#3847)

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• Dependabot Updates (DataBiosphere#3851)

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Commits on Oct 13, 2021

• Python logging takes format values as *args. (DataBiosphere#3852)

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• Change quick test to a 10 minute timeout. (DataBiosphere#3843)

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• Enable Dependabot updates (DataBiosphere#3827)

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• make pyupgrade (py36-plus) (DataBiosphere#3805)

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• Use exitStatus instead of exitReason for batch exit type comparison (DataBiosphere#3839)

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Commits on Oct 12, 2021

• Update jobstore function names. (DataBiosphere#3809)

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Commits on Oct 11, 2021

• [easy] Move AMI functions to lib. (DataBiosphere#3810)

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• CWL: safer test path generation for post-install testing (DataBiosphere#3818)

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• Don't consult LSF config when explicitly defining memory units. (DataBiosphere#3820)

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Commits on Oct 9, 2021

• robustly remove the state dirs (DataBiosphere#3836)

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• Remove use of sys.maxsize (DataBiosphere#3824)

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• spelling fixes (DataBiosphere#3814)

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Commits on Oct 8, 2021

• Add codeql-analysis for Python (DataBiosphere#3825)

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• Fix exception checking for exit_code (DataBiosphere#3830)

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• Upgrade to cwltool 3.1.20211004060744 (DataBiosphere#3833)

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• CWL helper jobs: better disk & memory requirements (DataBiosphere#3834)

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Commits on Sep 26, 2021

• Git ignore all downloaded CWL spec versions.

  DailyDreaming

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Commits on Sep 25, 2021

• Update version_template.py

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• cwl: add podman support; and other fixes from recent cwltool (DataBiosphere#3799)

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Commits on Sep 22, 2021

• Single source of truth for job state (DataBiosphere#3776)

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Commits on Sep 21, 2021

• Don't leak symlinks (DataBiosphere#3795)

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Commits on Sep 20, 2021

• Prevent exception from being raised when modifying dir permissions for clean up. (DataBiosphere#3778)

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• Issues/3768 fix scontrol output parsing (DataBiosphere#3793)

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Commits on Sep 11, 2021

• Do not set default for statePollingWait (DataBiosphere#3774)

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Commits on Sep 8, 2021

• Attempt to use absolute local paths when exportFile/importFile do not detect a schema. (DataBiosphere#3767)

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• issues/3741 AttributeError (DataBiosphere#3742)

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Commits on Aug 31, 2021

• Multi-zone balancing within regions for AWS autoscaling groups (DataBiosphere#3746)

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