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<!doctype html>
<html lang="en">
<head>
<title>Marco Notaro Software</title>
<meta charset="UTF-8">
<meta name="author" content="Marco Notaro">
<meta name="description" content="Marco Notaro WebSite">
<meta name="viewport" content="width=device-width, initial-scale=1.0"> <!-- to make the site responsive -->
<meta name="keywords" content="software libraries, R, Perl">
<link rel="shortcut icon" href="img/wolf.gif">
<link rel="stylesheet" type="text/css" href="css/css.css">
</head>
<body>
<div id="container">
<div id="header">
<a href="index.html" title="Marco Notaro"><img id="logo" src="img/marcologo.png" alt="Marco Notaro" height="50"></a>
</div>
<div id="navigationbar">
<div id="navigation">
<ul class="menubar">
<li><b><a class="menubar" href="index.html">Home</a></b></li>
<li><b><a class="menubar" href="interest.html">Interest</a></b></li>
<li><b><a class="menubar" href="teaching.html">Teaching</a></b></li>
<li><b><a class="menubar" href="publications.html">Publications</a></b></li>
<li><b><a class="menubar" href="software.html">Software</a></b></li>
<li><b><a class="menubar" href="map.html">Visited Places</a></b></li>
</ul>
</div>
</div>
<div class="bodycontainer">
<h3>Software Libraries</h3>
<p>
Following a list of my open-source bioinformatics tools.
</p>
<ul class="software">
<li class="software">
<b>HEMDAG</b>. An R software library implementing several Hierarchical Ensemble Methods (HEMs) for Directed Acyclic Graphs (DAGs).
<a href="https://CRAN.R-project.org/package=HEMDAG" target="_blank">
<img src="img/rlogo.svg" width="20" height="20" alt="cran_logo"></a>;
<a href="https://anaconda.org/bioconda/r-hemdag" target="_blank">
<img src="img/bioconda.png" width="16" height="16" alt="anaconda_logo"></a>;
<a href="https://github.com/marconotaro/HEMDAG" target="_blank">
<img src="img/github-icon.png" width="18" height="18" alt="github_logo"></a>;
<a href="https://hemdag.readthedocs.io/" target="_blank">
<img src="img/doclogo.png" width="17" height="17" alt="readthedocs_logo"></a>.
</li>
<li class="software">
<b>obogaf::parser</b>. A Perl5 module to parse <i>obo</i> (Open Biological and Biomedical Ontology) and <i>gaf</i> (Gene Association File) file.
<a href="https://metacpan.org/pod/obogaf::parser" target="_blank">
<img src="img/metacpan-logo.png" width="16" height="16" alt="cpan_logo"></a>;
<a href="https://anaconda.org/bioconda/perl-obogaf-parser" target="_blank">
<img src="img/bioconda.png" width="16" height="16" alt="anaconda_logo"></a>;
<a href="https://github.com/marconotaro/obogaf-parser" target="_blank">
<img src="img/github-icon.png" width="18" height="18" alt="github_logo"></a>;
<a href="https://obogaf-parser.readthedocs.io" target="_blank">
<img src="img/doclogo.png" width="17" height="17" alt="readthedocs_logo"></a>.
</li>
<li class="software">
<b>godata-pipe</b>. A pipeline to build datasets for GO term prediction.
<a href="https://github.com/marconotaro/godata-pipe" target="_blank">
<img src="img/github-icon.png" width="18" height="18" alt="github_logo"></a>.
</li>
</ul>
</div>
<div id="footer"></div>
</div> <!-- end container -->
</body>
</html>