ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.

Key features:

• able to handle datasets as big as 10¹² voxels
• multichannel images
• powerful and simple Python API to query arbitrary regions within the fused volume

On Ubuntu 16.04 LTS, run these commands:

sudo apt-get install cython3 python3-numpy
sudo pip3 install zetastitcher

Please read the documentation and follow the tutorial at this page:
https://lens-biophotonics.github.io/ZetaStitcher/

This open source software code was developed in whole in the Human Brain Project, funded from the European Union’s Horizon 2020 Framework Programme for Research and Innovation under Specific Grant Agreements No. 720270 and No. 785907 (Human Brain Project SGA1 and SGA2).

Co-funded by the European Union