FuseRunner: compression: use object attribute

This allows the compression level to be overridden
lens-biophotonics · Jun 9, 2022 · e648033 · e648033
1 parent 7423e6e
commit e648033
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/zetastitcher/fuse/fuse_runner.py b/zetastitcher/fuse/fuse_runner.py
@@ -25,7 +25,7 @@ def __init__(self, file_matrix):
         self.downsample_xy = None
         self.output_filename = None
         self.channel = -1
-        self.compression = 0
+        self.compression = 'zlib'
 
         self._is_multichannel = None
 
@@ -106,6 +106,6 @@ def run(self):
                 fused = np.moveaxis(fused, -3, -1)
 
             logger.info('saving output to {}'.format(self.output_filename))
-            tiff.imwrite(self.output_filename, fused, append=True, bigtiff=bigtiff, compression='zlib')
+            tiff.imwrite(self.output_filename, fused, append=True, bigtiff=bigtiff, compression=self.compression)
 
             self.zmin += thickness