experiments for runtime of trained model, implemented results (higher…

… threshold, remove small objects)
kirayuta · May 17, 2017 · ea761d7 · ea761d7
1 parent 6107fba
commit ea761d7
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diff --git a/code/helper/metrics.py b/code/helper/metrics.py
@@ -27,7 +27,7 @@ def recall(y_true, y_pred):
 
 def probmap_to_contour(probmap):
     # assume 2D input
-    outline = probmap >= 0.5
+    outline = probmap >= 0.7
 
     return outline
 
@@ -36,6 +36,7 @@ def contour_to_label(outline, image):
 
     # get connected components
     labels = skimage.morphology.label(outline, background=1)
+    skimage.morphology.remove_small_objects(labels, min_size = 100, in_place = True)
 
     n_ccs = np.max(labels)
 

diff --git a/code/results_timing/inf_pp_time_FULL.npy b/code/results_timing/inf_pp_time_FULL.npy