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chai-lab Public
Forked from chaidiscovery/chai-labChai-1, SOTA model for biomolecular structure prediction
Python Other UpdatedSep 12, 2024 -
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Cryo2Struct Public
Forked from jianlin-cheng/Cryo2StructDeep learning tools for converting cryo-EM density maps to protein structures
Python MIT License UpdatedAug 29, 2024 -
AFM-LIS Public
Forked from flyark/AFM-LISLocal Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)
Jupyter Notebook MIT License UpdatedAug 29, 2024 -
pytom-match-pick Public
Forked from SBC-Utrecht/pytom-match-pickGPU-accelerated template matching for cryo-ET
Python GNU General Public License v2.0 UpdatedAug 15, 2024 -
STOPGAP Public
Forked from wan-lab-vanderbilt/STOPGAPSTOPGAP is a MATLAB-based package for subtomogram averaging.
MATLAB UpdatedAug 8, 2024 -
foldseek Public
Forked from steineggerlab/foldseekFoldseek enables fast and sensitive comparisons of large structure sets.
C GNU General Public License v3.0 UpdatedAug 3, 2024 -
Meeko Public
Forked from forlilab/MeekoInterfacing RDKit and AutoDock
Python GNU Lesser General Public License v2.1 UpdatedAug 2, 2024 -
haddock3 Public
Forked from haddocking/haddock3Official repo of the modular BioExcel version of HADDOCK
Python Apache License 2.0 UpdatedAug 2, 2024 -
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rf_diffusion_all_atom Public
Forked from baker-laboratory/rf_diffusion_all_atomPublic RFDiffusionAA repo
Python Other UpdatedJul 9, 2024 -
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localcolabfold Public
Forked from YoshitakaMo/localcolabfoldColabFold on your local PC
Python MIT License UpdatedJun 18, 2024 -
AlphaPulldown Public
Forked from KosinskiLab/AlphaPulldownPython GNU General Public License v3.0 UpdatedJun 17, 2024 -
imodmodel Public
Forked from teamtomo/imodmodelIMOD model files as pandas dataframes in Python
Python Other UpdatedJun 13, 2024 -
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Graphormer Public
Forked from microsoft/GraphormerGraphormer is a general-purpose deep learning backbone for molecular modeling.
Python MIT License UpdatedJun 7, 2024 -
drgnai Public
Forked from ml-struct-bio/drgnaiPython GNU General Public License v3.0 UpdatedJun 7, 2024 -
ThermoMPNN Public
Forked from Kuhlman-Lab/ThermoMPNNGNN trained to predict changes in thermodynamic stability for protein point mutants
Python MIT License UpdatedJun 4, 2024 -
membrain-seg Public
Forked from teamtomo/membrain-segmembrane segmentation in 3D for cryo-ET
Python Other UpdatedJun 3, 2024 -
CLEAN-Contact Public
Forked from PNNL-CompBio/CLEAN-ContactPyTorch Implementation of CLEAN-Contact: Contrastive Learning-enabled Enzyme Functional Annotation Prediction with Structural Inference
Python Other UpdatedMay 29, 2024 -
Protein_Redesign Public
Forked from HySonLab/Protein_RedesignComplex-based Ligand-Binding Proteins Redesign by Equivariant Diffusion-based Generative Models
Python MIT License UpdatedMay 28, 2024 -
SEQCROW Public
Forked from QChASM/SEQCROWPlug-in for ChimeraX providing features for building and manipulating organic and organometallic molecules as well as displaying output from quantum chemistry computations.
Python GNU General Public License v3.0 UpdatedMay 22, 2024 -
DeepDeWedge Public
Forked from MLI-lab/DeepDeWedgeSelf-supervised deep learning for denoising and missing wedge reconstruction of cryo-ET tomograms
Jupyter Notebook BSD 2-Clause "Simplified" License UpdatedMay 14, 2024 -
martini-workshop Public
Forked from marrink-lab/martini-workshopMartini Workshop: Simulating a Minimal Bacterial Cell
Tcl UpdatedMay 7, 2024 -
alphascreen Public
Forked from sami-chaaban/alphascreenScreen interactions with AlphaFold-Multimer
Python MIT License UpdatedMay 7, 2024 -
beta-lac-protein-design Public
Forked from gauthierscience/beta-lac-protein-designAnalysis scripts and data for the manuscript "Simultaneous Enhancement of Multiple Functional Properties Using Evolution-informed Protein Design"
Jupyter Notebook MIT License UpdatedMay 6, 2024 -
blik Public
Forked from brisvag/blikPython tool for visualising and interacting with cryo-ET and subtomogram averaging data.
Python GNU General Public License v3.0 UpdatedMay 6, 2024