fix description of vcfparall

kdm9 · Jul 2, 2024 · ed2182b · ed2182b
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/README.md b/README.md
@@ -46,7 +46,7 @@ Where <subtool> is one of:
   galhist:              Make a summary histogram of git-annex-list output
   pairslash:            Add an old-style /1 /2 pair indicator to paired-end fastq files
   vcfstats:             Use bcftools to calculate various statistics, outputing an R-ready table
-  vcfparallel:          Use bcftools to calculate various statistics, outputing an R-ready table
+  vcfparallel:          Parallelise a bcf processing pipeline across regions
   shannon-entropy:      Calculate Shannon's entropy (in bits) at each column of one or more alignments
   fastasanitiser:       Sanitise fasta IDs to something sane, then back again
   tidyqc:               What if MultiQC was in the tidyverse? (and much worse)

diff --git a/blsl/vcfparallel.py b/blsl/vcfparallel.py
@@ -117,7 +117,7 @@ def merge_results(args, filestomerge):
 
 
 def main(argv=None):
-    """Use bcftools to calculate various statistics, outputing an R-ready table"""
+    """Parallelise a bcf processing pipeline across regions"""
     ap = argparse.ArgumentParser()
     ap.add_argument("-R", "--regions", type=argparse.FileType("rt"),
             help="Use regions defined in this BED file. NB! Will only do these regions and will not check for overlaps. Be careful. Cols should be chrom, start0, end, ... and tab separated (i.e. a BED file).")