#This is a sample file distributed with Galaxy that is used by some

#ENCODE tools. The regions.loc file has this format (white space

#characters are TAB characters):

#

#<build> <uid> <region_description> <file_path>

#

#So, for example, if you had ENCODE Regions for build hg16 stored in

#/depot/data2/galaxy/regions/encode_regions_coords_hg16.bed, then the

#regions.loc entry would look like this:

#

#hg16 encode_hg16 ENCODE Regions /depot/data2/galaxy/regions/encode_regions_coords_hg16.bed

#

#and your /depot/data2/galaxy/regions/ directory would

#contain all of your regions files (e.g.):

#

#-rw-r--r-- 1 dan g2cache 1367 2006-03-14 13:55 encode_regions_coords_hg16.bed

#-rw-r--r-- 1 dan g2cache 1367 2006-03-14 13:53 encode_regions_coords_hg17.bed

#...etc...

#

#Your regions.loc file should include an entry per line for each region

#file you have stored. For example:

#

#hg16 encode_hg16 ENCODE Regions /depot/data2/galaxy/regions/encode_regions_coords_hg16.bed

#hg17 encode_hg17 ENCODE Regions /depot/data2/galaxy/regions/encode_regions_coords_hg17.bed