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Changes to documentation in FAQs and built-in components #70

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Sep 30, 2022
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Changes to documentation in FAQs and built-in components #70

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f090dac
Changes to documentation in fsq and buil
susanneweis Sep 14, 2022
e1eb199
chore: improve contribution guide in FAQ
synchon Sep 21, 2022
f375b2a
docs: add new section for setting up VSCode in FAQ
synchon Sep 21, 2022
c6eaf0e
docs: update datagrabbers in docs
synchon Sep 21, 2022
2be4477
docs: update markers in docs
synchon Sep 21, 2022
c225975
docs: update atlases in docs
synchon Sep 21, 2022
7b404c9
docs: rename builtin.rst section
synchon Sep 21, 2022
c51ef27
docs: fix docs for datagrabbers
synchon Sep 23, 2022
74b4e32
docs: update atlases
synchon Sep 23, 2022
60ec202
docs: fix UCLA dataset access type
synchon Sep 23, 2022
3d44dc2
docs: create separate contribution guidelines section and reference it
synchon Sep 23, 2022
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docs: update atlases
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@synchon
synchon committed Sep 28, 2022
commit 74b4e32f968bf06f6d243ce21dc2e95c779f7f0c
37 changes: 22 additions & 15 deletions docs/builtin.rst
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Expand Up @@ -182,21 +182,28 @@ Atlases
Available
---------

======== ================= ================================================================= =============
Name Options Keys Version added
======== ================= ================================================================= =============
Schaefer ``n_rois``, | Schaefer900x7, Schaefer1000x7, Schaefer100x17, Schaefer200x17, 0.0.1
``yeo_networks`` | Schaefer500x7, Schaefer600x7, Schaefer700x7, Schaefer800x7,
| Schaefer300x17, Schaefer400x17, Schaefer500x17, Schaefer600x17,
| Schaefer700x17, Schaefer800x17, Schaefer900x17, Schaefer1000x17
SUIT ``space`` | SUITxMNI, SUITxSUIT 0.0.1
TIAN ``scale``, | TianxS1x3TxMNI6thgeneration, TianxS1x3TxMNInonlinear2009cAsym,
``space``, | TianxS1x7TxMNI6thgeneration, TianxS2x3TxMNI6thgeneration,
``magneticfield`` | TianxS2x3TxMNInonlinear2009cAsym, TianxS2x7TxMNI6thgeneration,
| TianxS3x3TxMNI6thgeneration, TianxS3x3TxMNInonlinear2009cAsym,
| TianxS3x7TxMNI6thgeneration, TianxS4x3TxMNI6thgeneration,
| TianxS4x3TxMNInonlinear2009cAsym, TianxS4x7TxMNI6thgeneration 0.0.1
======== ================= ================================================================= =============
======== ================= ================================================================================= ============= ====================================================
Name Options Keys Version added Publication
======== ================= ================================================================================= ============= ====================================================
Schaefer ``n_rois``, | ``Schaefer900x7``, ``Schaefer1000x7``, ``Schaefer100x17``, ``Schaefer200x17``, 0.0.1 | Alexander Schaefer, Ru Kong, Evan M Gordon,
``yeo_networks`` | ``Schaefer300x17``, ``Schaefer400x17``, ``Schaefer500x17``, ``Schaefer600x17``, | Timothy O Laumann, Xi-Nian Zuo, Avram J Holmes,
| ``Schaefer700x17``, ``Schaefer800x17``, ``Schaefer900x17``, ``Schaefer1000x17`` | Simon B Eickhoff, B T Thomas Yeo. Local-Global
| Parcellation of the Human Cerebral Cortex from
| Intrinsic Functional Connectivity MRI, Cerebral
| Cortex, Volume 28, Issue 9, September 2018, Pages
| 3095–3114.
| https://doi.org/10.1093/cercor/bhx179
SUIT ``space`` | ``SUITxMNI``, ``SUITxSUIT`` 0.0.1 | Diedrichsen J. (2006). A spatially unbiased atlas
| template of the human cerebellum. NeuroImage,
| 33(1), 127–138.
| https://doi.org/10.1016/j.neuroimage.2006.05.056
TIAN ``scale``, | ``TianxS1x3TxMNI6thgeneration``, ``TianxS1x3TxMNInonlinear2009cAsym``, 0.0.1 | Tian, Y., Margulies, D.S., Breakspear, M. et al.
``space``, | ``TianxS1x7TxMNI6thgeneration``, ``TianxS2x3TxMNI6thgeneration``, | Topographic organization of the human subcortex
``magneticfield`` | ``TianxS2x3TxMNInonlinear2009cAsym``, ``TianxS2x7TxMNI6thgeneration``, | unveiled with functional connectivity gradients.
| ``TianxS3x3TxMNI6thgeneration``, ``TianxS3x3TxMNInonlinear2009cAsym``, | Nat Neurosci 23, 1421–1432 (2020).
| ``TianxS3x7TxMNI6thgeneration``, ``TianxS4x3TxMNI6thgeneration``, | https://doi.org/10.1038/s41593-020-00711-6
| ``TianxS4x3TxMNInonlinear2009cAsym``, ``TianxS4x7TxMNI6thgeneration``
======== ================= ================================================================================= ============= ====================================================


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