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[ENH]: Allow BOLDWarper to warp between MNI spaces #302

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merged 10 commits into from
Feb 21, 2024
Merged

[ENH]: Allow BOLDWarper to warp between MNI spaces #302

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8545670
update: add support for multi MNI transformations in BOLDWarper
synchon Feb 7, 2024
783c686
update: improve tests for BOLDWarper
synchon Feb 7, 2024
9fd6e44
fix: change interpolation method for BOLDWarper to LanczosWindowedSinc
synchon Feb 8, 2024
bf3bb87
fix: correct parametrized parameters for BOLDWarper test
synchon Feb 8, 2024
1bbe60b
chore: add changelog 302.enh
synchon Feb 8, 2024
31037f7
update: improve tests for BOLDWarper preprocess to multi MNI
synchon Feb 13, 2024
8952035
chore: raise error if BOLDWarper is not needed for warping
synchon Feb 16, 2024
6db58fe
update: remove space restriction in BOLDWarper
synchon Feb 16, 2024
5a4bf8c
update: improve test in test_bold_warper.py
synchon Feb 21, 2024
37a68eb
chore: skip multi MNI warping via BOLDWarper test
synchon Feb 21, 2024
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update: remove space restriction in BOLDWarper
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@synchon
synchon committed Feb 16, 2024
commit 6db58feaeece8f647642d9d6e314894fff3f0162
13 changes: 2 additions & 11 deletions junifer/preprocess/bold_warper.py
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Original file line number Diff line number Diff line change
Expand Up @@ -14,6 +14,7 @@
)

import nibabel as nib
from templateflow import api as tflow

from ..api.decorators import register_preprocessor
from ..data import get_template, get_xfm
Expand Down Expand Up @@ -64,17 +65,7 @@ def __init__(self, reference: str) -> None:
super().__init__(
on="BOLD", required_data_types=["BOLD", self.ref, "Warp"]
)
elif self.ref in [
"MNI152Lin",
"MNI152NLin6Sym",
"MNI152NLin6Asym",
"MNI152NLin2009aSym",
"MNI152NLin2009aAsym",
"MNI152NLin2009bSym",
"MNI152NLin2009bAsym",
"MNI152NLin2009cAsym",
"MNI152NLin2009cAsym",
]:
elif self.ref in tflow.templates():
super().__init__(on="BOLD", required_data_types=["BOLD"])
else:
raise_error(f"Unknown reference: {self.ref}")
Expand Down
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