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Commits on Oct 30, 2012

• adding faSplit

  jstjohn

  committed
  c7d14ef

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Commits on Aug 1, 2012

• updates from kent source tree

  jstjohn

  committed
  bcc7d85

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• updates

  jstjohn

  committed
  6bd97f3

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• beta level agp 2 support

  jstjohn

  committed
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Commits on Jul 16, 2012

• fresh pull from kent, part 1

  jstjohn

  committed
  802872a

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• adding back makefile

  jstjohn

  committed
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• adding back dukeUniquessFromFasta.cpp

  jstjohn

  committed
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• adding back dukeUniquenessFromFasta.cpp

  jstjohn

  committed
  b848eb5

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• Merge commit '88f0168eebe0ab9df66d4ee9763d3fdcedc8f1fe'

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• adding back dukeUniquenss

  jstjohn

  committed
  88f0168

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Commits on May 31, 2012

• fixing minor issue in line wrapping

  jstjohn

  committed
  d3ddbf0

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• adding in fast c program that makes NCBI compatable contig files

  jstjohn

  committed
  2d0e396

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Commits on May 30, 2012

• output correct contig and gap annotations

  jstjohn

  committed
  9769e9b

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• output correct contig and gap annotations

  jstjohn

  committed
  6d80ff7

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• output correct contig and gap annotations

  jstjohn

  committed
  3ba62f9

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• adding in hgFakeAgp variant that is specific to NCBI's specs

  jstjohn

  committed
  8740c9b

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• adding in hgFakeAgp variant that is specific to NCBI's specs

  jstjohn

  committed
  6c350c6

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• updating to output fasta with minimum gap length

  jstjohn

  committed
  eb1bc2f

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• updating to output fasta with minimum gap length

  jstjohn

  committed
  4dc9c35

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Commits on May 4, 2012

• fixing new bug

  jstjohn

  committed
  03f592a

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• fixing new bug

  jstjohn

  committed
  d0a99bf

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• tripple checking that everything is uppercase

  jstjohn

  committed
  245f43a

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Commits on May 3, 2012

• fixing minor formatting issue in output

  jstjohn

  committed
  95910f7

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• initial commit of parsimonyFromMaf, and deleting old dukeUniquenessFromFasta (now a module of my Jellyfish repo)

  jstjohn

  committed
  c40bac7

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• initial commit of parsimonyFromMaf, and deleting old dukeUniquenessFromFasta (now a module of my Jellyfish repo)

  jstjohn

  committed
  5c2a8d4

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Commits on May 1, 2012

• local changes?

  jstjohn

  committed
  8d55631

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• changing google's hash to store strings so that it is easier on memory management

  jstjohn

  committed
  2575767

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• major rewrite including google sparsehash

  jstjohn

  committed
  943a767

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• adding in google sparsehash

  jstjohn

  committed
  6919c92

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• fixing options bug

  jstjohn

  committed
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• Merge branch 'master' of git@github.com:jstjohn/KentLib

  jstjohn

  committed
  77a7b50

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• fresh pull form kent source

  jstjohn

  committed
  ae26af1

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• adding untested utility to make a dukeUniqueness wiggle track given a reference fasta sequence

  jstjohn

  committed
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Commits on Apr 28, 2012

• new version

  jstjohn

  committed
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• Fixed segfault: Thanks StackOverflowvalgrind --leak-check=yes --dsymutil=yes mafPairwiseSyntenyDecay -speciesMain=allMis1 -speciesOther=anoCar2 anoCar2.allMis1.rbest.maf.gz (http://stackoverflow.co…

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