Name		Name	Last commit message	Last commit date
parent directory ..
_static		_static
_templates		_templates
genomes		genomes
release-notes		release-notes
Makefile		Makefile
README.md		README.md
api-example.md		api-example.md
api.md		api.md
classifying-signatures.md		classifying-signatures.md
command-line.md		command-line.md
conf.py		conf.py
databases-advanced.md		databases-advanced.md
databases.md		databases.md
dev_plugins.md		dev_plugins.md
developer.md		developer.md
faq.md		faq.md
funding.md		funding.md
index.md		index.md
kmers-and-minhash.ipynb		kmers-and-minhash.ipynb
legacy-databases.md		legacy-databases.md
more-info.md		more-info.md
other-languages.md		other-languages.md
plotting-compare.ipynb		plotting-compare.ipynb
podar-lineage.csv		podar-lineage.csv
publications.md		publications.md
release.md		release.md
requirements.md		requirements.md
runtime.txt		runtime.txt
sidebar.md		sidebar.md
sourmash-collections.ipynb		sourmash-collections.ipynb
sourmash-examples.ipynb		sourmash-examples.ipynb
sourmash-internals.md		sourmash-internals.md
sourmash-sketch.md		sourmash-sketch.md
storage.md		storage.md
support.md		support.md
toc.md		toc.md
tutorial-basic.md		tutorial-basic.md
tutorial-install.md		tutorial-install.md
tutorial-lemonade.md		tutorial-lemonade.md
tutorial-lin-taxonomy.md		tutorial-lin-taxonomy.md
tutorial-long.md		tutorial-long.md
tutorials-lca.md		tutorials-lca.md
tutorials.md		tutorials.md
using-LCA-database-API.ipynb		using-LCA-database-API.ipynb
using-sourmash-a-guide.md		using-sourmash-a-guide.md

README.md

Documentation on the docs

We use MyST to generate Sphinx doc output from Markdown input.

Useful tips and tricks:

Linking internally between sections in the docs

For linking within the sourmash docs, you should use the auto-generated header anchors provided by MyST.

You can generate a list of these for a given document with:

myst-anchors -l 3 command-line.md