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Commits on Sep 12, 2023

• Merge pull request #95 from jasenfinch/devel

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  Jasen Finch

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• Fix missing function import

  

  jasenfinch

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  95a4459

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• Updated the package NEWS

  

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• Fix typo in corrected TIC plot chunk header in the pre-treatment vignette

  

  jasenfinch

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• Update README.md

  

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• Reduce the gap between dendrogram and headmap in explanatory heatmaps

  

  jasenfinch

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• Display intensities as percentages in class based explanatory heatmaps

  

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• Add the transformPercent method

  

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• remove the use of ggplot2::aes_string

  

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• fix various tidyverse warnings

  

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• Fix error when calculating mds for multiple comparisons with differing numbers of observations

  

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• bump version to 0.15.4

  

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Commits on Aug 24, 2023

• Merge pull request #94 from jasenfinch/devel

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  Jasen Finch

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Commits on Aug 23, 2023

• The plotExplanatoryHeatmap() method for the Analysis S4 class now returns a warning and skips plotting if an error is encountered

  

  jasenfinch

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• Update package NEWS

  

  jasenfinch

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  2f6f162

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• bumped version to 0.15.3

  

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• Fix the margin value displayed in plotSupervisedRF()

  

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Commits on Aug 14, 2023

• Merge pull request #93 from jasenfinch/devel

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  Jasen Finch

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• Update the package NEWS

  

  jasenfinch

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Commits on Aug 9, 2023

• refactor by the median TIC

  

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• Add a log10 transformation to the pre-treatment in the quick start analysis

  

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• Enable refactoring of TIC normalised feature intensities by multiplying by the maximum TIC

  

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Commits on Jun 14, 2023

• Merge branch 'perm' into devel

  

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• bump version to 0.15.2

  

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Commits on Jun 13, 2023

• Remove permutation cap

  

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Commits on May 30, 2023

• Merge pull request #92 from jasenfinch/devel

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  Jasen Finch

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• Update package NEWS

  

  jasenfinch

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  1aaceda

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• fixed bug where order of class labels cannot be customised in plotLDA

  

  jasenfinch

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Commits on Apr 20, 2023

• enable the arguments of explanatoryFeatures() to be passed through plotExplanatoryHeatmap()

  

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Commits on Mar 9, 2023

• The occupancy methods now throw a helpful error message if no features are available on which to compute class occupancy

  

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• bump version to 0.15.1

  

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Commits on Feb 20, 2023

• Merge pull request #91 from jasenfinch/devel

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  Jasen Finch

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• update github actions workflows

  

  jasenfinch

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  b81658b

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• check fix

  

  jasenfinch

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• vignette fixes

  

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