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Long-read structural variation pipeline (using Nextflow) for PacBio and ONT data

Some tips:

  1. Set up your Singularity cache like so: export NXF_SINGULARITY_CACHEDIR="<folder_to_store_singularity_images>"
  2. Set up your temp folder: export NXF_TEMP="<nextflow_temp_folder>"

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ONT and PacBio data

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