Solve puzzles. Learn CUDA.

Annotated data.

Python package to perform enrichment analysis from omics data.

a scalable data profiler

GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems

Scientific Python Library Development Guide and Cookiecutter

TorchGeo: datasets, samplers, transforms, and pre-trained models for geospatial data

KvikIO - High Performance File IO

Coz: Causal Profiling

Library for specialized dense and sparse matrix operations, and deep learning primitives.

Technology-invariant pipeline for spatial omics analysis (Xenium / Visium HD / MERSCOPE / CosMx / PhenoCycler / MACSima / ...) that scales to millions of cells

An introduction to bioimage analysis - http://bioimagebook.github.io

Flow & mass cytometry analytics.

Type annotations and runtime checking for shape and dtype of JAX/NumPy/PyTorch/etc. arrays. https://docs.kidger.site/jaxtyping/

🧬 gget enables efficient querying of genomic reference databases

machine-readable file format for genomic library sequence and structure

Test suite for the PyData Array APIs standard

software to detect doublets

Compatibility layer for common array libraries to support the Array API

The tools for your .cool's

Declarative creation of composable visualization for Python (Complex heatmap, Upset plot, Oncoprint and more~)

Sparse Tensors in Python and more! Datastructure-Driven Array Programming Language

Python helpers to limit the number of threads used in native libraries that handle their own internal threadpool (BLAS and OpenMP implementations)

🐟 Python profile viewer

Compression for Redundant Sparse Matrices

Build numpy-style docstrings programmatically and apply them using a decorator.

LIANA+: an all-in-one framework for cell-cell communication

The slow descent into madness