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DDR

Requirements:

R (packages: edgeR) Python (packages: pandas)

Running the tool for finding differentially expressed genes

Rscript DDR_Ref.R

If you have another python version that has pandas:

Rscript DDR_Ref.R PYTHON_PATH

Output files

  • final_out.csv: Normalized count data
  • ref_cpm_BRCA.csv: Expression of reference genes
  • overlap_test_fdr_1_BRCA_DEC.csv: Differentially expressed genes with fdr < 0.1
  • overlap_test_fdr_05_BRCA.csv: Differentially expressed genes with fdr < 0.05

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  • Python 72.8%
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