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Update README.md
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ishworthapa authored Aug 25, 2019
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Expand Up @@ -37,7 +37,8 @@ Rscript step3_overlapFisher.R 115 RNASeq
* overlap_test_fdr_1_[RNASeq|microarray].csv or : Differentially expressed genes with fdr < 0.1
* overlap_test_fdr_05_[RNASeq|microarray].csv: Differentially expressed genes with fdr < 0.05

## Pipeline for microarray data. Note that the steps are similar to for RNASeq data.
## Pipeline for microarray data.
### Note that the steps are similar to that for RNASeq data.
Rscript step0_preprocess_microarray.R
Rscript step1_calculateStats.R microarray
Rscript step2_findRef.R microarray
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