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Update step3_overlapFisher.R
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ishworthapa authored Sep 12, 2019
1 parent 4c56358 commit 572179d
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion src/step3_overlapFisher.R
Original file line number Diff line number Diff line change
Expand Up @@ -233,7 +233,7 @@ if(data == "RNASeq"){
write.csv(overlap_pvalue_fdr[keep, ], "overlap_test_fdr_1_RNASeq.csv")

keep <- (overlap_pvalue_fdr$overlap_test_padjust <= 0.05)
write.csv(overlap_pvalue_fdr[keep, ], "overlap_test_fdr_05_RANSeq.csv")
write.csv(overlap_pvalue_fdr[keep, ], "overlap_test_fdr_05_RNASeq.csv")
} else if (data == "microarray") {
WNT_cpm <- norm.table[, 1:group1.sampleSize]
OT_cpm <- norm.table[, (group1.sampleSize+1):ncol(norm.table)]
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