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Initial project structure and code
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imedina committed Feb 10, 2012
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75 changes: 75 additions & 0 deletions config/gm-config.json
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var AVAILABLE_SPECIES = [{"name":"Homo Sapiens", "species":"hsa", "icon":""},
{"name":"Mus musculus", "species":"mmu", "icon":""},
{"name":"Danio rerio", "species":"dre", "icon":""}
];

var AVAILABLE_TRACKS = [{"species":"hsa",
"enabled_tracks":[{"id":"Gene/Transcript", "checked":true},
{"id":"Cytoband", "checked":true},
{"id":"Sequence", "checked":true}
]},
{"species":"mmu",
"enabled_tracks":[{"id":"Gene/Transcript", "checked":false},
{"id":"Cytoband", "checked":false}
]},
{"species":"dre",
"enabled_tracks":[{"id":"Gene/Transcript", "checked":false},
{"id":"Cytoband", "checked":true}
]},
];

var DAS_TRACKS = [{"species":"hsa",
"categories":[
{"name":"Core",
"sources":[
{"name":"GRC Region NCBI_37","url":"http://das.sanger.ac.uk/das/grc_region_GRCh37/features","checked":true},
{"name":"Vega genes","url":"http://das.sanger.ac.uk/das/vega_ens_zv8_genes/features","checked":false}
]
},
{"name":"Variation",
"sources":[
{"name":"Cosmic Mutations NCBI 36","url":"http://das.sanger.ac.uk/das/cosmic_mutations_GRCh37/features","checked":false}
]
},
{"name":"Regulatory",
"sources":[]
}
]
},{"species":"mmu",
"categories":[
{"name":"Core",
"sources":[
{"name":"GRC Region NCBI_37","url":"http://das.sanger.ac.uk/das/grc_region_GRCh37/features","checked":false},
{"name":"Vega genes","url":"http://das.sanger.ac.uk/das/vega_ens_zv8_genes/features","checked":true}
]
},
{"name":"Variation",
"sources":[
{"name":"Cosmic Mutations NCBI 36","url":"http://das.sanger.ac.uk/das/cosmic_mutations_GRCh37/features","checked":false}
]
},
{"name":"Regulatory",
"sources":[]
}
]
},{"species":"dre",
"categories":[
{"name":"Core",
"sources":[
{"name":"GRC Region NCBI_37","url":"http://das.sanger.ac.uk/das/grc_region_GRCh37/features","checked":false},
{"name":"Vega genes","url":"http://das.sanger.ac.uk/das/vega_ens_zv8_genes/features","checked":false}
]
},
{"name":"Variation",
"sources":[
{"name":"Cosmic Mutations NCBI 36","url":"http://das.sanger.ac.uk/das/cosmic_mutations_GRCh37/features","checked":true}
]
},
{"name":"Regulatory",
"sources":[]
}
]
}
];


30 changes: 30 additions & 0 deletions config/plugins-config.json
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var GENOME_MAPS_REGISTERED_PLUGINS = {};

var GENOME_MAPS_AVAILABLE_PLUGINS = [{"category" : "Test",
"plugins" : [{"name" : "MyPlugin",
"email" : "yo@cipf.es",
"version" : "1.0",
"description" : "",
"icon" : "",
"permissions" : "",
"available_species" : [{"name:":"hsa", "assembly":"hg19"}]
}]
},
{"category" : "",
"plugins" : [{"name" : "Expression",
"email" : "imedina@cipf.es",
"version" : "1.0",
"description" : "",
"icon" : "",
"permissions" : "",
"available_species" : [{"name:":"hsa", "assembly":"hg19"}]
},
{"name" : "Genotype",
"email" : "imedina@cipf.es",
"version" : "1.0",
"description" : "",
"icon" : "",
"permissions" : "",
"available_species" : [{"name:":"hsa", "assembly":"hg19"}]
}]
}];
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