From 39193324ed94a022646ede33665e1953e3753666 Mon Sep 17 00:00:00 2001 From: Samantha Zarate Date: Thu, 31 Jan 2019 09:26:53 -0800 Subject: [PATCH] Bug fix with docker push (#47) * Resolve username tag * Bug fix --- .travis.yml | 2 +- test/set_up_tests.sh | 8 ++++---- 2 files changed, 5 insertions(+), 5 deletions(-) diff --git a/.travis.yml b/.travis.yml index 5d6ebc79..4de1222a 100644 --- a/.travis.yml +++ b/.travis.yml @@ -36,7 +36,7 @@ jobs: deploy: provider: script - script: echo "$DOCKER_PASSWORD" | docker login -u "$DOCKER_USERNAME" --password-stdin && docker push dnanexus/parliament2:$TAG + script: echo "$DOCKER_PASSWORD" | docker login --username "$DOCKER_USERNAME" --password-stdin && docker push dnanexus/parliament2:$TAG on: branch: master diff --git a/test/set_up_tests.sh b/test/set_up_tests.sh index 6af0e5a7..39a5e924 100644 --- a/test/set_up_tests.sh +++ b/test/set_up_tests.sh @@ -4,8 +4,8 @@ mkdir -p /home/dnanexus/in mkdir -p /home/dnanexus/out # Download small input BAM and index -wget https://dl.dnanex.us/F/D/6FX1Jz6bp92b9KFv574Fg306kjkGFK1ybKpG35yp/SRR504516_small.bam -o /home/dnanexus/in/small_input.bam -wget https://dl.dnanex.us/F/D/K695ZppQz1v8Pq6yJKKf0426VYyjkk8g32vgv3kZ/SRR504516_small.bam.bai -o /home/dnanexus/in/small_input.bai +wget https://dl.dnanex.us/F/D/6FX1Jz6bp92b9KFv574Fg306kjkGFK1ybKpG35yp/SRR504516_small.bam -O /home/dnanexus/in/small_input.bam +wget https://dl.dnanex.us/F/D/K695ZppQz1v8Pq6yJKKf0426VYyjkk8g32vgv3kZ/SRR504516_small.bam.bai -O /home/dnanexus/in/small_input.bai # Download reference FASTA and index -wget https://dl.dnanex.us/F/D/bb37ZbXqjFjZY6Fv0G4GzPGjx5QkYJB8XV6kB5K8/hs37d5.fa.gz -o /home/dnanexus/in/ref.fa.gz -wget https://dl.dnanex.us/F/D/p2qJ1z7gb1ZfFJX3XgPP37325kYKVk06zZp1JPbY/hs37d5.fa.fai -o /home/dnanexus/in/ref.fa.fai +wget https://dl.dnanex.us/F/D/bb37ZbXqjFjZY6Fv0G4GzPGjx5QkYJB8XV6kB5K8/hs37d5.fa.gz -O /home/dnanexus/in/ref.fa.gz +wget https://dl.dnanex.us/F/D/p2qJ1z7gb1ZfFJX3XgPP37325kYKVk06zZp1JPbY/hs37d5.fa.fai -O /home/dnanexus/in/ref.fa.fai