Further fixes to R CMD CHECK. All that's left now are the documentati…

…ons...
haziqj · Jun 12, 2017 · ce85e49 · ce85e49
1 parent 6e15b67
commit ce85e49
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Showing 7 changed files with 13 additions and 9 deletions.
diff --git a/.Rbuildignore b/.Rbuildignore
@@ -5,3 +5,4 @@
 ^cran-comments\.md$
 ^README\.Rmd$
 ^README_files$
+^README_cache$
diff --git a/.travis.yml b/.travis.yml
@@ -8,4 +8,4 @@ sudo: false
 
 r_check_args: '--as-cran'
 
-r_github_packages: 'haziqjamil/iprior'
+r_github_packages: haziqjamil/iprior
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -5,7 +5,9 @@ Version: 0.1.0.9002
 Authors@R: person("Haziq", "Jamil", email = "haziq.jamil@gmail.com",
                   role = c("aut", "cre"))
 Description: Fit I-prior probit models to binary and multinomial data for classification or inference using fitted probabilities.
-License: GPL (>= 3.0)
+URL: https://github.com/haziqjamil/iprobit
+BugReports: https://github.com/haziqjamil/iprobit/issues
+License: GPL (>= 3.0) | file LICENSE
 Encoding: UTF-8
 Imports: 
   ggplot2,
@@ -20,4 +22,5 @@ Suggests:
   testthat
 URL: https://github.com/haziqjamil/iprobit
 BugReports: https://github.com/haziqjamil/iprobit/issues
+LazyData: yes
 RoxygenNote: 6.0.1
diff --git a/NAMESPACE b/NAMESPACE
@@ -28,10 +28,6 @@ export(is.iprobitMod_bin)
 export(is.iprobitMod_mult)
 import(ggplot2)
 import(iprior)
-importFrom(mlbench,mlbench.1spiral)
-importFrom(mvtnorm,rmvnorm)
-importFrom(reshape2,melt)
-importFrom(scales,pretty_breaks)
 importFrom(stats,coef)
 importFrom(stats,delete.response)
 importFrom(stats,dnorm)
@@ -45,5 +41,6 @@ importFrom(stats,pnorm)
 importFrom(stats,predict)
 importFrom(stats,rnorm)
 importFrom(utils,data)
+importFrom(utils,head)
 importFrom(utils,setTxtProgressBar)
 importFrom(utils,txtProgressBar)
diff --git a/R/Namespace.R b/R/Namespace.R
@@ -1,7 +1,7 @@
 # iprobit package imports ------------------------------------------------------
 #' @importFrom stats coef delete.response dnorm fitted integrate kernel
 #'   model.extract model.frame pnorm predict rnorm logLik
-#' @importFrom utils data setTxtProgressBar txtProgressBar
+#' @importFrom utils data head setTxtProgressBar txtProgressBar
 #' @import iprior
 #' @import ggplot2
 NULL

diff --git a/R/Utilities.R b/R/Utilities.R
@@ -29,7 +29,8 @@ is.iprobitData <- function(x) inherits(x, "iprobitData")
 
 #' Extract the variational lower bound
 #'
-#' @param object an object of class \code{ipriorProbit}.
+#' @param object An object of class \code{ipriorProbit}.
+#' @param ... This is not used here.
 #'
 #' @return The variational lower bound.
 #' @export

diff --git a/man/logLik.iprobitMod.Rd b/man/logLik.iprobitMod.Rd
Original file line number	Diff line number	Diff line change
Expand Up		@@ -8,4 +8,4 @@ sudo: false

		r_check_args: '--as-cran'

		r_github_packages: 'haziqjamil/iprior'
		r_github_packages: haziqjamil/iprior