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@gyorilab

Gyori Lab for Computational Biomedicine

Accelerating discovery in biomedicine using AI @ Northeastern University

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  1. emmaa emmaa Public

    Ecosystem of Machine-maintained Models with Automated Analysis

    Python 10 11

  2. indra_db indra_db Public

    A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their own content and knowledge access. Our implementation of the dat…

    Python 16 10

  3. gilda gilda Public

    Grounding of biomedical named entities with contextual disambiguation

    Python 39 12

  4. protmapper protmapper Public

    Map amino acid sites of post-translational modifications from models or data to reference positions.

    Python 6 7

  5. indra_world indra_world Public

    INDRA World Modelers services

    Jupyter Notebook 6 5

  6. indra_cogex indra_cogex Public

    INDRA Context Graph Extension

    Jupyter Notebook 8 11

Repositories

Showing 10 of 49 repositories
  • outbreak_kg Public

    Knowledge graphs for disease outbreak scenarios

    gyorilab/outbreak_kg’s past year of commit activity
    Python 0 2 0 1 Updated Nov 5, 2024
  • mira Public

    MIRA modeling framework

    gyorilab/mira’s past year of commit activity
    Jupyter Notebook 9 BSD-2-Clause 7 14 5 Updated Nov 2, 2024
  • indra_spine Public
    gyorilab/indra_spine’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Oct 30, 2024
  • indra_cogex Public

    INDRA Context Graph Extension

    gyorilab/indra_cogex’s past year of commit activity
    Jupyter Notebook 8 BSD-2-Clause 11 17 7 Updated Oct 29, 2024
  • gilda Public

    Grounding of biomedical named entities with contextual disambiguation

    gyorilab/gilda’s past year of commit activity
    Python 39 BSD-2-Clause 12 8 5 Updated Oct 29, 2024
  • emmaa Public

    Ecosystem of Machine-maintained Models with Automated Analysis

    gyorilab/emmaa’s past year of commit activity
    Python 10 BSD-2-Clause 11 2 3 Updated Oct 21, 2024
  • indra_db_lite Public

    Work with content from indra_db in a local sqlite database.

    gyorilab/indra_db_lite’s past year of commit activity
    Python 0 BSD-2-Clause 3 0 0 Updated Oct 18, 2024
  • indra_network_search Public

    REST API for querying the network of biochemical mechanisms in the INDRA DB.

    gyorilab/indra_network_search’s past year of commit activity
    Python 0 BSD-2-Clause 2 13 0 Updated Oct 17, 2024
  • protmapper_paper Public

    Code to generate results and figures relevant to the ProtMapper manuscript.

    gyorilab/protmapper_paper’s past year of commit activity
    Python 1 1 0 0 Updated Oct 10, 2024
  • indra_db Public

    A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their own content and knowledge access. Our implementation of the database is the back-end to many of our projects, providing a vast and detailed knowledge base derived from many resources.

    gyorilab/indra_db’s past year of commit activity
    Python 16 GPL-3.0 10 8 4 Updated Oct 2, 2024
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