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Cool project! I was wondering if it was possible to open a folder with .fcs
files without a .wsp
file?
Something like:
julia> readdir()
5-element Vector{String}:
"Specimen_001_1 BFP_002.fcs"
"Specimen_001_1 CTL_001.fcs"
"Specimen_001_2 BFP_004.fcs"
"Specimen_001_2 CTL_003.fcs"
julia> FlowAtlas.run(""; files = "*.fcs")
[ Info: Loading FCS files...
ERROR: AssertionError: no such file:
Stacktrace:
[1] load(path::String; files::String, cols::Symbol, kwargs::@Kwargs{})
@ FlowWorkspace ~/.julia/packages/FlowWorkspace/8HLjp/src/Utils.jl:32
[2] load
@ ~/.julia/packages/FlowWorkspace/8HLjp/src/Utils.jl:30 [inlined]
[3] run(path::String; files::String, port::Int64, url::String, cols::Symbol, drop::Vector{…}, nlevels::Int64, nbins::Int64, heatmapQuantileEdge::Float64, violinQuantileEdge::Float64, channelScheme::ColorSchemes.ColorScheme{…}, labelScheme::ColorSchemes.ColorScheme{…}, hold::Bool)
@ FlowAtlas ~/.julia/packages/FlowAtlas/yxybS/src/FlowAtlas.jl:65
[4] top-level scope
@ REPL[22]:1
Some type information was truncated. Use `show(err)` to see complete types.
My package environment on Julia 1.10:
(jl_TZ3iwY) pkg> st
Status `/tmp/jl_TZ3iwY/Project.toml`
[ef7debb3] FlowAtlas v0.1.13
I would love to use this tool to visualize my populations and draw gates, but I understand if that's out of the scope of this project.
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