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Commits on Mar 23, 2017

• various changes to allow scanning for atypical substitutions.

  joshsinger

  committed
  3506aed

Commits on Mar 13, 2017

• Collection year turned into a range.

  Show description for 12e05f0
  joshsinger

  committed
  12e05f0

Commits on Feb 7, 2017

• updated alignment frequencies generations.

  joshsinger

  committed
  ce79e44

• reinstated various things.

  Show description for 2c9436b
  joshsinger

  committed
  2c9436b

• incorporate updated genotypes and LANL metadata into the build.

  joshsinger

  committed
  f62af27

Commits on Feb 3, 2017

• Moved over to using the NCBI RefSeq genotype references where possible.

  Show description for b529952
  joshsinger

  committed
  b529952

• Added missing subtype 2l into the project build.

  joshsinger

  committed
  ab2f9fc

Commits on Jan 24, 2017

• added gb_place_sampled as a schema extension and to gb populator

  joshsinger

  committed
  7e61915

Commits on Jan 13, 2017

• update to gb lab construct to make sure it is false for ncbi-curated.

  joshsinger

  committed
  b56e056

Commits on Jan 9, 2017

• no message

  joshsinger

  committed
  67c392e

Commits on Dec 22, 2016

• various updates, mostly cosmetic.

  joshsinger

  committed
  429fbe9

• various cosmetic updates.

  joshsinger

  committed
  3e6359b

Commits on Dec 19, 2016

• updates to the curated set / alignment tree based on EPA genotyping.

  joshsinger

  committed
  510173e

Commits on Dec 15, 2016

• work for comparing vipr / metadata / epa

  joshsinger

  committed
  9aea105

Commits on Dec 12, 2016

• expanded curated set.

  joshsinger

  committed
  cad9fc0

Commits on Dec 9, 2016

• more genotyping updates.

  joshsinger

  committed
  3b275a4

Commits on Dec 8, 2016

• genotyper update.

  joshsinger

  committed
  0df3428

Commits on Dec 7, 2016

• updated phylogeny generation to GTRGAMMAI

  joshsinger

  committed
  1e4cdd2

Commits on Dec 5, 2016

• model tester updates.

  joshsinger

  committed
  d40ca21

Commits on Dec 2, 2016

• updated scripts and module definitions, relating to genotyping and phylogeny.

  joshsinger

  committed
  c5adb3c

Commits on Nov 30, 2016

• updated outgroup alignment.

  Show description for 9b1ecb9
  joshsinger

  committed
  9b1ecb9

Commits on Nov 29, 2016

• mostly outgroup related stuff.

  joshsinger

  committed
  c11940f

• outgroup related stuff.

  joshsinger

  committed
  1ac7cc1

Commits on Nov 28, 2016

• changes relating to referenceMember schema change.

  joshsinger

  committed
  86fde94

• 2 reference sequences have been replaced with their RefSeq equivalents:

  Show description for 79e191f
  joshsinger

  committed
  79e191f

Commits on Nov 25, 2016

• phylo-related updates.

  joshsinger

  committed
  fb63a76

Commits on Nov 22, 2016

• some build refactoring.

  Show description for dcf6301
  joshsinger

  committed
  dcf6301

Commits on Nov 16, 2016

• model test and phylogeny generation updates.

  joshsinger

  committed
  66e0ad8

Commits on Nov 11, 2016

• 1000 bootstraps.

  joshsinger

  committed
  c8d37c7

• 100 replicates next time.

  joshsinger

  committed
  47def3d

• various changes to the reference alignment.

  Show description for a28b943
  joshsinger

  committed
  a28b943

Commits on Nov 9, 2016

• removed frequency display for the epitopes

  joshsinger

  committed
  85a3458

Commits on Nov 3, 2016

• fixed HLA-C issue.

  joshsinger

  committed
  290a4c4

Commits on Nov 2, 2016

• fixed web analysis tool module.

  joshsinger

  committed
  cc77f90

• drug publication page: findings now retrieved using a list command and paging context rather than a renderer.

  joshsinger

  committed
  2a30826

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