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  • home Public

    TypeScript Updated Jun 20, 2024

  • home-dashboard Public

    my custom home server dashboard written in Typescript using the Next.js framework

    typescript nextjs homeserver homelab
    TypeScript Updated May 20, 2024

  • fastqc-nxf Public

    Nextflow Updated Apr 17, 2024

  • hello Public

    Forked from nextflow-io/hello

    Classic hello world script in Nextflow language

    Nextflow Apache License 2.0 Updated Apr 16, 2024

  • ui Public

    Forked from shadcn-ui/ui

    Beautifully designed components that you can copy and paste into your apps. Accessible. Customizable. Open Source.

    TypeScript MIT License Updated Apr 16, 2024

  • gibsonMatt.github.io Public

    HTML 1 Updated Apr 5, 2024

  • bioneer Public

    a tool for quickly getting the correct bcftools command

    python bioinformatics bcftools llm dynamic-few-shot
    Python Updated Jan 1, 2024

  • home-server Public

    my microservice homeserver

    Updated Jul 23, 2023

  • forecasty Public

    JavaScript Updated Sep 10, 2021

  • tldR Public

    Forked from mpjuers/tldR
    R MIT License Updated Feb 5, 2021

  • galtom Public

    Repo to accompany Galápagos tomato invasion genetics manuscript. Gibson et al. (2020).

    Python Updated Sep 29, 2020

  • prettyMap Public

    R Updated Sep 21, 2020

  • PopGen.jl Public

    Forked from BioJulia/PopGen.jl

    Population Genetics functions in Julia

    Julia MIT License Updated Aug 2, 2020

  • pimpGEA Public

    Repo to accompany paper "Regional differences in the abiotic environment contribute to genomic divergence within a wild tomato species".

    R 2 1 Updated May 28, 2020

  • stdpopsim Public

    Forked from popsim-consortium/stdpopsim

    A library of standard population genetic models

    Python GNU General Public License v3.0 Updated May 15, 2020

  • stacks-pairwise Public

    Calculate pairwise divergence from Stacks genotyping output

    Python MIT License Updated May 3, 2020

  • dadi_pipeline Public

    Forked from dportik/dadi_pipeline

    An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting goodness of fit tests, and plotting.

    Python GNU Lesser General Public License v3.0 Updated Sep 20, 2019

  • jaltomataQTL Public

    QTL mapping workflow for BC1 population of Jaltomata.

    r evolution stacks qtl pleiotropy rqtl linkage-map
    Python Updated Jan 11, 2019

  • gal-map Public

    interactive map of our galapagos field sites

    Jupyter Notebook Updated Jul 3, 2018

  • gbs_pipeline Public

    testing tassel gbs pipeline for jaltomata gbs data

    Shell Updated Apr 28, 2018

  • AdventOfCode2017 Public

    Go Updated Dec 14, 2017

  • deepvariant Public

    Forked from google/deepvariant

    DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

    Python BSD 3-Clause "New" or "Revised" License Updated Dec 6, 2017

  • qtl Public

    Forked from kbroman/qtl

    R/qtl: A QTL mapping environment

    R Updated Nov 27, 2017

  • Genotype-corrector Public

    Forked from lileiting/Genotype-corrector

    A useful tool to correct genotype calls for individuals in the RILs with the goal to improve genetic mapping

    Python BSD 2-Clause "Simplified" License Updated Mar 18, 2017

  • scripts Public

    general tools

    Python Updated Mar 14, 2017

  • QB2017_Gibson Public

    HTML GNU General Public License v3.0 Updated Mar 10, 2017