Change model write for gocamgen==0.0.4 convention

geneontology · Mar 24, 2020 · 7fc7769 · 7fc7769
1 parent 181959e
commit 7fc7769
Showing 1 changed file with 1 addition and 2 deletions.
diff --git a/pathway_importer.py b/pathway_importer.py
@@ -181,8 +181,7 @@ def main():
             relation_axiom = model.writer.emit_axiom(source_id, property_id, target_id)
             model.add_evidence(relation_axiom, "EXP", ["PMID:" + pmid for pmid in pc.pmid])
 
-    with open(model.filepath, 'wb') as f:
-        model.writer.writer.serialize(destination=f)
+    model.write(args.outfile)
 
     print(skipped_count)