PyKEEN (Python KnowlEdge EmbeddiNgs) is a Python package designed to train and evaluate knowledge graph embedding models (incorporating multi-modal information).

Installation • Quickstart • Datasets • Models • Support • Citation

The latest stable version of PyKEEN can be downloaded and installed from PyPI with:

$ pip install pykeen

The latest version of PyKEEN can be installed directly from the source on GitHub with:

pip install git+https://github.com/pykeen/pykeen.git

More information about installation (e.g., development mode, Windows installation, extras) can be found in the installation documentation.

This example shows how to train a model on a dataset and test on another dataset.

The fastest way to get up and running is to use the pipeline function. It provides a high-level entry into the extensible functionality of this package. The following example shows how to train and evaluate the TransE model on the Nations dataset. By default, the training loop uses the stochastic local closed world assumption (sLCWA) training approach and evaluates with rank-based evaluation.

from pykeen.pipeline import pipeline

result = pipeline(
    model='TransE',
    dataset='nations',
)

The results are returned in an instance of the PipelineResult dataclass that has attributes for the trained model, the training loop, the evaluation, and more. See the tutorials on understanding the evaluation and making novel link predictions.

PyKEEN is extensible such that:

• Each model has the same API, so anything from pykeen.models can be dropped in
• Each training loop has the same API, so pykeen.training.LCWATrainingLoop can be dropped in
• Triples factories can be generated by the user with from pykeen.triples.TriplesFactory

The full documentation can be found at https://pykeen.readthedocs.io.

Below are the models, datasets, training modes, evaluators, and metrics implemented in pykeen.

Any sampler class extending the optuna.samplers.BaseSampler, such as their sampler implementing the CMA-ES algorithm, can also be used.

PyKEEN includes a set of curated experimental settings for reproducing past landmark experiments. They can be accessed and run like:

pykeen experiments reproduce tucker balazevic2019 fb15k

Where the three arguments are the model name, the reference, and the dataset. The output directory can be optionally set with -d.

PyKEEN includes the ability to specify ablation studies using the hyper-parameter optimization module. They can be run like:

pykeen experiments ablation ~/path/to/config.json

We used PyKEEN to perform a large-scale reproducibility and benchmarking study which are described in our article:

@article{ali2020benchmarking,
  title={Bringing Light Into the Dark: A Large-scale Evaluation of Knowledge Graph Embedding Models Under a Unified Framework},
  author={Ali, Mehdi and Berrendorf, Max and Hoyt, Charles Tapley and Vermue, Laurent and Galkin, Mikhail and Sharifzadeh, Sahand and Fischer, Asja and Tresp, Volker and Lehmann, Jens},
  journal={arXiv preprint arXiv:2006.13365},
  year={2020}
}

We have made all code, experimental configurations, results, and analyses that lead to our interpretations available at https://github.com/pykeen/benchmarking.

Contributions, whether filing an issue, making a pull request, or forking, are appreciated. See CONTRIBUTING.md for more information on getting involved.

This project has been supported by several organizations (in alphabetical order):

• Bayer
• Enveda Therapeutics
• Fraunhofer Institute for Algorithms and Scientific Computing
• Fraunhofer Institute for Intelligent Analysis and Information Systems
• Fraunhofer Center for Machine Learning
• Ludwig-Maximilians-Universität München
• Munich Center for Machine Learning (MCML)
• Siemens
• Smart Data Analytics Research Group (University of Bonn & Fraunhofer IAIS)
• Technical University of Denmark - DTU Compute - Section for Cognitive Systems
• Technical University of Denmark - DTU Compute - Section for Statistics and Data Analysis
• University of Bonn

The PyKEEN logo was designed by Carina Steinborn.

If you have found PyKEEN useful in your work, please consider citing our article:

@article{ali2020pykeen,
  title={PyKEEN 1.0: A Python Library for Training and Evaluating Knowledge Graph Emebddings},
  author={Ali, Mehdi and Berrendorf, Max and Hoyt, Charles Tapley and Vermue, Laurent and Sharifzadeh, Sahand and Tresp, Volker and Lehmann, Jens},
  journal={arXiv preprint arXiv:2007.14175},
  year={2020}
}