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SvPileup should ignore reads marked as duplicates

Status: Open.

#41 In fulcrumgenomics/fgsv;

· ameynert opened on Jul 15, 2024

AggregateSvPileup should report the number of reads associated with each position

Status: Open.

#39 In fulcrumgenomics/fgsv;

· msto opened on Apr 16, 2024

Semantic versioning is not followed on development versions

Status: Open.

#38 In fulcrumgenomics/fgsv;

· nh13 opened on Apr 11, 2024

Are some "Possible Deletion"s actually intra-contig rearrangements?

Status: Open.

#32 In fulcrumgenomics/fgsv;

· nh13 opened on Dec 29, 2023

SvPileup should allow some minimal filtering

Status: Open.

#26 In fulcrumgenomics/fgsv;

· tfenne opened on Sep 28, 2023

fgsv should enable easier review in IGV

Status: Open.

#25 In fulcrumgenomics/fgsv;

· tfenne opened on Sep 28, 2023

AggregateSvPileup should account for inaccurate split-read breakpoint positions

enhancementNew feature or requestNew feature or request

Status: Open.

#13 In fulcrumgenomics/fgsv;

· pamelarussell opened on May 24, 2022

Tools doc symlink broken

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#12 In fulcrumgenomics/fgsv;

· nh13 opened on Apr 6, 2022

Document running the tools and any bwa mem options

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#11 In fulcrumgenomics/fgsv;

· nh13 opened on Apr 6, 2022