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Issues list

pooch cache not working in GitHub CI testing
#883 opened Dec 18, 2024 by tcompa
@tcompa
Update coverage version and use it consistently in GHA testing
#881 opened Dec 18, 2024 by tcompa
@tcompa
2
Update style of auto-generated docs_info markdown string
#875 opened Dec 13, 2024 by tcompa
3
Fractal/NGIO logging ngio
#867 opened Nov 19, 2024 by tcompa
1
To review: can we use pyproject.toml metadata for e.g. authors? JSON Schemas
#865 opened Nov 12, 2024 by tcompa
Make calculate registration more robust in table column handling on reruns
#851 opened Oct 11, 2024 by jluethi
ngio for fractal-tasks-core: Overview
#850 opened Oct 10, 2024 by jluethi
9 of 63 tasks
Move napari workflows wrapper task into its own repository
#849 opened Oct 10, 2024 by jluethi
Reproduce issue with file paths ending / for Convert Cellvoyager Multiplexing to OME-Zarr Converters
#845 opened Oct 4, 2024 by jluethi
Normalize plate names in Cellvoyager converter
#843 opened Sep 30, 2024 by jluethi
1
Reduce dependency on pydantic._internal dependencies Pull requests that update a dependency file JSON Schemas
#835 opened Sep 9, 2024 by tcompa
7
Move to anndata 0.11 dependencies Pull requests that update a dependency file Tables AnnData and ROI/feature tables
#833 opened Sep 4, 2024 by tcompa
2
Napari-workflows tests fail with stacview 0.9.0 dependencies Pull requests that update a dependency file
#827 opened Aug 30, 2024 by tcompa
4
Review "UserWarning: Pydantic serializer warnings: Expected int but got int64" in cellvoyager-to-ome-zarr init task Backlog Backlog issues we may eventually fix, but aren't a priority
#824 opened Aug 29, 2024 by tcompa
Update zenodo dataset, setting channel.active to True Converters ngio
#823 opened Aug 28, 2024 by tcompa
3
Relax numpy dependency to <=2.1.0 dependencies Pull requests that update a dependency file
#821 opened Aug 27, 2024 by tcompa
2
Ensure correct ordering of acquisition in multiplexing converter
#819 opened Aug 21, 2024 by jluethi
@jluethi
Allow overwrite of existing image in apply registration
#800 opened Jul 16, 2024 by jluethi
@jluethi
[ngio] Refactor masked_loading_wrapper logic to do relabeling in the masking step ngio
#787 opened Jul 12, 2024 by jluethi
1
Review/optimize use of get_overlapping_pairs_3D in Cellpose task Backlog Backlog issues we may eventually fix, but aren't a priority performance testing
#779 opened Jul 3, 2024 by tcompa
4
ROI upsampling issue when original image resolution is not divisible by 2 ngio
#771 opened Jun 26, 2024 by jluethi
Verify compatibility with Python 3.12 dependencies Pull requests that update a dependency file testing
#770 opened Jun 26, 2024 by tcompa
2
Doc updates documentation Improvements or additions to documentation
#766 opened Jun 17, 2024 by tcompa
[cellpose segmentation task] label or wavelength_id for ChannelInputModel
#762 opened Jun 11, 2024 by BioinfoTongLI
1
Possible path towards improvements of tasks JSON schemas JSON Schemas
#758 opened Jun 10, 2024 by tcompa
1
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