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Commits on May 2, 2021

• removed the old minimap2 chaining

  lh3

  committed
  b7f4d8a

• prepare to backport unimap/minigraph chaining

  lh3

  committed
  e81927e

Commits on May 1, 2021

• clarify CLR when necessary

  lh3

  committed
  f7dc579

• Updated README for the HiFi preset

  lh3

  committed
  817cb81

• r1028: backport minigraph -U

  lh3

  committed
  0f5608c

• r1027: renamed hifi to map-hifi; changed default

  lh3

  committed
  e8823a3

• r1026: fixed bugs in seed sampling add hifi

  lh3

  committed
  7edeec6

Commits on Apr 30, 2021

• r1025: seed rescuring

  lh3

  committed
  feb92d3

• a bit refactoring for future changes

  lh3

  committed
  cdbd96b

Commits on Apr 22, 2021

• added code of conduct

  lh3

  committed
  ba52c79

Commits on Apr 12, 2021

• r1022: check INDEL lengths in simple cases

  lh3

  committed
  cd9ccfa

Commits on Apr 11, 2021

• larger window size for longer INDELs

  lh3

  committed
  86b7164

• update END when it is not there

  lh3

  committed
  9ab95be

• make sure ins/del match

  lh3

  committed
  b51e859

• r1018: scripts for SV evaluation

  lh3

  committed
  a9037dc

Commits on Apr 9, 2021

• removed mappy.c

  lh3

  committed
  9729fa9

• Release minimap2-2.18 (r1015)

  lh3

  committed
  b6ff332

• prepare for release

  lh3

  committed
  77abafa

Commits on Apr 8, 2021

• r1013: changed to a more accurate similarity est

  Show description for 507d39a
  lh3

  committed
  507d39a

• r1012: fixed an off-by-one bug; resolves lh3#489

  lh3

  committed
  827ca4b

Commits on Apr 5, 2021

• Convert from spaces to tabs.

  

  marcus1487

  authored and

  lh3

  committed
  d3dde2f

• Convert python install from build_ext to setuptools setup_requires.

  

  marcus1487

  authored and

  lh3

  committed
  7db2e8d

• r1009: fixed a compiler warning

  lh3

  committed
  0b41dd2

• r1008: don't parse space in BED

  lh3

  committed
  2b47846

Commits on Mar 23, 2021

• bump travis python version to 3.9

  lh3

  committed
  67dd906

Commits on Mar 12, 2021

• require overlap ratio when considering centromere

  lh3

  committed
  1b0bb7b

Commits on Mar 7, 2021

• explained --junc-bed in README

  lh3

  committed
  1c4b7e8

• improved sveval

  lh3

  committed
  ecbc399

Commits on Feb 15, 2021

• added sveval

  lh3

  committed
  4dfd495

Commits on Feb 7, 2021

• option to print errors only

  lh3

  committed
  194b457

• evaluate large-scale misjoins

  lh3

  committed
  75c8933

Commits on Jan 29, 2021

• print number of errors on each read

  lh3

  committed
  1025993

Commits on Jan 14, 2021

• added a command for simple VCF statistics

  lh3

  committed
  a3253d1

Commits on Nov 15, 2020

• Merge remote-tracking branch 'origin/master'

  lh3

  committed
  2da649d

Commits on Aug 21, 2020

• added --mask-len for lh3#659

  lh3

  committed
  f995f55

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