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Commits on Aug 31, 2023

• Update README.md

  Pablo1990

  authored
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Commits on Jul 16, 2021

• Update issue templates

  Pablo1990

  authored
  f0d3342

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• Update issue templates

  Pablo1990

  authored
  3787c44

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Commits on Jul 26, 2018

• Updated README.txt to contain a short summary

  davhel

  authored
  89b32af

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• Added CHANGELOG.txt

  davhel

  committed
  31ee9a2

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• CELL/EDGE_INTENSITY: improved description for added functionalities

  davhel

  committed
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Commits on Jul 25, 2018

• EDGE_COLOR_TAG: added warning messages for export with selection mode other than 0. Due to the incorrect length readout (see commit 3777e4b) the export is not reliable for modes other than 0. Chang…

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  davhel

  committed
  0e503b2

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• Merge branch 'develop'

  davhel

  committed
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• Merge branch 'feature/fisun_virtual_clones' into develop

  davhel

  committed
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Commits on Jul 18, 2018

• Updated README and LICENSE file (removed duplicates in subfolder)

  davhel

  committed
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• Rewrote README to be more specific to CellGraph and include installation and development instructions

  davhel

  committed
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Commits on Jan 23, 2018

• bugfix: fixed regression due to ring_intensity overlay using same varAddRoi variable from the EdgeTagOverlay in CellOverlay

  davhel

  committed
  0e3cda0

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Commits on Jan 12, 2018

• EdgeColorTag: [export unstable!] reversed ROI length computation from commit df4e4b7 to the actual length of the Edge and not the measurement ROI. Because the mesurement ROI is an area Geometry, th…

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  davhel

  committed
  3777e4b

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• cell_clone: remove message of node removal

  davhel

  committed
  9737573

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• cell_clone: refactored variable name of evidence_channel field to detection_channel

  davhel

  committed
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• cell_clone: included name of detection_channel and detection_threshold in output excel file

  davhel

  committed
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• cell_clone: changed clone numbering to start from 1 and ordered clones according to id in export excel sheet

  davhel

  committed
  0444a75

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• cell_clone: added legend

  davhel

  committed
  758e6c7

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• cell_clone: added dynamic ezVar parameter from CellOverlay plugin for the intensity threshold choice and a static choice for the image channel. Reformatted description of CellCloneOverlay

  davhel

  committed
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• cell_clone: added boundary and neighbor computations as methods of VirtualClone in order to include their count in the excel file of CellCloneOverlay. Increased the Countour Stroke of Clones.

  davhel

  committed
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• Added shape buffering to Cell class

  davhel

  committed
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• cell_clone: added id field to VirtualClone object and various output methods to retirieve area, perimeter, centroid and cell count; Added excel export to overlay to export the same quantities

  davhel

  committed
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Commits on Jan 11, 2018

• cell_clone: added VirtualClone object representing the detected cells

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  davhel

  committed
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• stGraphOverlay: changed signature of specifyLegend method to expect abstract Line2D rather than Line2D.Double to avoid namespace clash with java.lang.Double

  davhel

  committed
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Commits on Jan 10, 2018

• cell_clone: added connected sets detection by using the Connectivity_Inspector of the jgraphT library and a slider in the layerOptionsPanel to adjust dynamically the detection threshold.

  davhel

  committed
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Commits on Jan 9, 2018

• cell_clone: first running prototype for clone detection. Average intensity within every cell is evaluated against a threshold (for testing=100) and positive cells are highlighted in orange. Test im…

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  davhel

  committed
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• Merge branch 'feature/ring_intensity' into develop

  davhel

  committed
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• CellSurface: Fixed bug affecting the ROI3DPolygonalMesh generation. Object seemingly needed Abstract class input.

  davhel

  committed
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• Merge branch 'master' into feature/ring_intensity

  davhel

  committed
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Commits on Jul 22, 2016

• CellSurface: fixed description + on/off switch as for CellOverlay

  davhel

  committed
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• CellEditor: fixed description + on/off switch like CellOverlay

  davhel

  committed
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• CellExport: Fixed description in EzLabel + on/off switch like for CellOverlay

  davhel

  committed
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• CellOverlay: Optimized Description rendering with on/off switch. Fix for correct text color still missing

  davhel

  committed
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Commits on Jul 21, 2016

• EzLabel_HTML adaptation: first chunk

  davhel

  committed
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Commits on Jul 20, 2016

• IntensityReader: safety fallback for small edge ROIs for which a chosen top-intensity ratio might result in less than 1 pixel being selected. By default this is now set to a minimum of 1 pixel.

  davhel

  committed
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