Phylogeography of Lineage 2 in Africa.

Data and code to reproduce the figures and tables in the CRyPTIC ECOFF/ECV paper

Tools to analyse tuberculosis WGS data

Python package to annotate WGS genomes of tuberculosis and get information about their CRISPR

Reconstruct M.tuberculosis CRISPR locus from WGS data

A programm complex for annotating mycobacterium tuberculosis SNPs with information about drug resistance. It also performes scoring of SNPs not found in provided databases.

Automatically exported from code.google.com/p/figtree

Snakemake pipelines to run the analysis for the Illumina vs. Nanopore comparison.

Yet another M.tuberculosis typing and resistance tool, but for the impatient (not in-patient)

Linux shell for iOS

Für Emilyn

Jupyter/iPython notebooks related to bioinformatics.