emilyncosta
Follow
-
transflow Public
Forked from cvn001/transflowA snakemake workflow for WGS-based tuberculosis transmission analysis
HTML GNU General Public License v3.0 UpdatedFeb 9, 2024 -
UNIFESP_NTM_newspecies-nf Public
Paper "Description of new species of Mycobacterium terrae complex isolated from sewage at the São Paulo Zoological Park Foundation in Brazil"
-
TransPhylo Public
Forked from xavierdidelot/TransPhyloReconstruction of transmission trees using genomic data
R GNU General Public License v2.0 UpdatedSep 27, 2023 -
cryptic-ecoffs Public
Forked from fowler-lab/cryptic-ecoffsData and code to reproduce the figures and tables in the CRyPTIC ECOFF/ECV paper
Jupyter Notebook Other UpdatedMar 9, 2023 -
-
DeeplexiconDemuxAndSplit Public
Forked from UMCUGenetics/DeeplexiconDemuxAndSplitWrapper pipeline script running demux and split on nanopore fast5 and fastq data using the Deeplexicon pipeline
Shell MIT License UpdatedDec 23, 2022 -
CRISPRbuilder-TB Public
Forked from cguyeux/CRISPRbuilder-TBReconstruct M.tuberculosis CRISPR locus from WGS data
Python GNU General Public License v3.0 UpdatedDec 21, 2022 -
CPqGMFiocruzBA_MTB_MDR-XDR_nf Public
Forked from bioinformatics-lab/rita_bahia_analysis_nfNextflow MIT License UpdatedApr 6, 2022 -
tbvcfreport Public
Forked from COMBAT-TB/tbvcfreportGenerate an interactive HTML-based report from M.tb SnpEff annotated VCF(s)
HTML GNU General Public License v3.0 UpdatedMar 17, 2022 -
LABMAM-FIOCRUZRJ_Legionella_nf Public
Forked from bioinformatics-lab/dandrea_legionella_nfNextflow MIT License UpdatedAug 26, 2021 -
LABBACT-INI-FIOCRUZRJ_Mtb_MonoINH_nf Public
Forked from bioinformatics-lab/mtb_mono_inh_nfNextflow UpdatedAug 26, 2021 -
-
MTBseq_source Public
Forked from ngs-fzb/MTBseq_sourceMTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis c…
Perl Other UpdatedJul 13, 2021 -
-
LABMAM-FIOCRUZRJ_Mbovishuman_nf Public
Forked from bioinformatics-lab/bov_human_nfNextflow UpdatedMay 26, 2021 -
-
-
-
-
-
-
-
mtc Public
Forked from cguyeux/mtcPython package to annotate WGS genomes of tuberculosis and get information about their CRISPR
Python Other UpdatedJan 19, 2020 -
-
-
IEC-PA_Figures_PhDEmilyn Public
Isolates images from PDF for publication in journals.
-
-