Changes in version 1.8.0

+ Replaced RJSONIO with rjson

+ Replaced all but one sapply() with vapply()

+ Deprecated getColoredPathway

+ New features

- Upgraded findPathwaysByXXX, listPathways and getPathwayInfo functions to return dataframes

- Upgraded findPathwaysByLiterature to present literature fields

+ Doc fixes

- Updated tests and vignettes using dataframes

Changes in version 1.6.0

+ Minor updates to the Pathway Analysis vignette

Changes in version 1.4.1

+ Bug fixes

- Updated the findPathwaysByLiterature test case (fixing a false positive fail)

- Removed tests for unavailable service: getColoredPathway

Changes in version 1.4.0

+ Bug fixes

- Added XML to Imports -- #4 missing import

+ Doc fixes

- Fixed sign in subsetting function in vignette -- user issue on bioc forum

- Added the missing References section to one of the vignettes

- Added BioSchemas annotation to the vignettes

Changes in version 1.2.0

+ Bug fixes

- Added method to retrieve GMT files -- #3 issue

+ Doc fixes

- New vignette for pathway analysis

Changes in version 1.0.0

+ New features

- Added derivative functions for both listPathways and getPathwaysByXref to allow specifying the return of simple lists of WPIDs, URLs or names.

- Added support for PNG from getColoredPathway

- Added functions for all remaining web service API methods

- Added a download function for archived pathway sets in various formats

- Added Overview and BridgeDbR vignettes

+ Significant changes under the hood

- Updated all functions to use REST calls instead of Curl

- Simplified function development by abstracting as dedicated wikipathwaysGET function

- Added tests for all new functions

- Added enumerated parameters in a number of places for better input validation

+Bug fixes

- First official release. No bugs... yet!