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Commits on Feb 5, 2021

• bw

  krijgerp

  committed
  58bdf75

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• bw option

  krijgerp

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  603f0e2

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• bigwig option

  krijgerp

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  698b7e7

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• changed frag folder

  krijgerp

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  51d2a2f

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• add -x for bigwig (as b is already in use)

  krijgerp

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  6a19b92

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• bigwig function

  krijgerp

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  957da30

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• bigwig export function

  krijgerp

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  7beb776

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• bigwig export function

  krijgerp

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  9fdbb5d

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• introduced bigwig option

  krijgerp

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• Merge branch 'master' of https://github.com/deLaatLab/pipe4C

  krijgerp

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  96f608a

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• A span of 100 is giving problems when zooming in at the nt resolution as is not compatible with making bigwigs using the UCSC tools.

  krijgerp

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Commits on Jan 25, 2021

• added space to warning message.

  krijgerp

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  33d051c

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• Update README.md

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  krijgerp

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  88d3742

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Commits on Jan 7, 2021

• version 1.1

  krijgerp

  committed
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Commits on Jan 6, 2021

• Example for when genome is not starting with chr

  krijgerp

  committed
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Commits on Oct 2, 2020

• Merge branch 'master' of https://github.com/deLaatLab/pipe4C

  krijgerp

  committed
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• Added option to ignore the chr_fix chromosomes

  krijgerp

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Commits on May 13, 2020

• Rename Primers for second round PCR to Primers for second round PCR.md

  krijgerp

  authored
  9ccff09

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• Update Primers for second round PCR

  krijgerp

  authored
  94c7b36

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• Update Primers for second round PCR

  krijgerp

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  c0b97b1

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• Create Primers for second round PCR

  krijgerp

  authored
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Commits on Mar 11, 2020

• update to doPeakC in functions.R

  geertgeeven

  authored
  e03e8f6

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• Update exportPeakCPeaks in functions.R

  geertgeeven

  authored
  6535108

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• update getPeakCPeaks in functions.R

  geertgeeven

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Commits on Jan 23, 2020

• fixed bug in doPeakC

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  geertgeeven

  authored
  3befc6c

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Commits on Dec 13, 2019

• Merge branch 'master' of https://github.com/deLaatLab/pipe4C

  krijgerp

  committed
  31fd913

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• remove "chr" when used as vpchr in vpinfo

  krijgerp

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Commits on Dec 12, 2019

• Update README.md

  krijgerp

  authored
  0626168

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• Added missing spaces to message.

  krijgerp

  committed
  ae402e2

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• Merge branch 'master' of https://github.com/deLaatLab/pipe4C

  krijgerp

  committed
  19aec1a

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• Removing _alt chr from BSgenome in addition to _hap chromosomes.

  krijgerp

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Commits on Dec 10, 2019

• fixed fastq trim

  krijgerp

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• fixed trim.length in trim.FASTQ function.

  krijgerp

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Commits on Dec 9, 2019

• optimized doPeakC by only loading RDS 1 time.

  krijgerp

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• command

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