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  1. velvet velvet Public

    Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Research, 1…

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  2. ascii_plots ascii_plots Public

    Convenience function for quick and dirty data analysis

    Python 68 13

  3. oases oases Public

    De novo transcriptome assembler for short reads

    C 62 9

  4. WiggleTools WiggleTools Public

    Forked from Ensembl/WiggleTools

    Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency

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  5. pyAVG pyAVG Public

    AVG sampler prototype

    Python 5

  6. cn-avg cn-avg Public

    Copy Number AVG pipeline for the analysis of NGS Cancer data

    Python 3 3