Skip to content

Files

Failed to load latest commit information.

Latest commit

 Cannot retrieve latest commit at this time.

History

History
 
 

TemplateServer

Folders and files

NameName
Last commit message
Last commit date

parent directory

..
 
 
 
 
 
 
 
 
 
 
 
 
 
 

ColabFold template server

ColabFold submits a list of templates to this server, which returns a subset of the PDB70 containing only these hits and the respctive mmCIF files.

Installation

You need Go (1.12 or later) to compile the server.

go build -o template-server

Create a config.json file and enter the path to the PDB70 database in the database field:

{
    "verbose": true,
    "server" : {
        "address"    : "127.0.0.1:3002",
        "cors"       : true
    },
    "paths" : {
        "database"    : "/path-to/pdb70"
    }
}

The template server requires in addition to the usual PDB70 database files (pdb70_{a3m,hhm,cs219}.ff{data,index}) another FFindex database pdb70_cif.ff{data,index} containing all mmCIF files. We will provide a script to generate this database at some point.