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Add cdm-zarr to the TDS (Unidata#445)
* Add zarr to tds and tds-platform * Add zarr test catalog and tests
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package thredds.tds; | ||
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import static com.google.common.truth.Truth.assertThat; | ||
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import java.nio.charset.StandardCharsets; | ||
import javax.servlet.http.HttpServletResponse; | ||
import org.junit.Ignore; | ||
import org.junit.Test; | ||
import thredds.test.util.TestOnLocalServer; | ||
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public class TestZarr { | ||
final private static String ZARR_DIR_PATH = "localContent/zarr/zarr_test_data.zarr"; | ||
final private static String ZARR_ZIP_PATH = "localContent/zarr/zarr_test_data.zip"; | ||
final private static String ZARR_S3_PATH = "s3-zarr/zarr_test_data.zarr"; | ||
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@Test | ||
public void shouldOpenZarrDirectory() { | ||
checkWithOpendap(ZARR_DIR_PATH); | ||
} | ||
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@Test | ||
public void shouldOpenZarrZip() { | ||
checkWithOpendap(ZARR_ZIP_PATH); | ||
} | ||
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@Ignore("Still working on S3 Zarr") | ||
@Test | ||
public void shouldOpenObjectStoreZarrFile() { | ||
checkWithOpendap(ZARR_S3_PATH); | ||
} | ||
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private static void checkWithOpendap(String path) { | ||
final String endpoint = TestOnLocalServer.withHttpPath("dodsC/" + path + ".dds"); | ||
final byte[] content = TestOnLocalServer.getContent(endpoint, HttpServletResponse.SC_OK); | ||
final String stringContent = new String(content, StandardCharsets.UTF_8); | ||
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assertThat(stringContent).contains("Int32 /group_with_attrs/F_order_array[dim0 = 20][dim1 = 20];"); | ||
} | ||
} |
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tds/src/test/content/thredds/public/testdata/zarr/zarr_test_data.zarr/.zgroup
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{ | ||
"zarr_format": 2 | ||
} |
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...rc/test/content/thredds/public/testdata/zarr/zarr_test_data.zarr/group_with_attrs/.zattrs
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{ | ||
"group_attr": "foo" | ||
} |
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...rc/test/content/thredds/public/testdata/zarr/zarr_test_data.zarr/group_with_attrs/.zgroup
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{ | ||
"zarr_format": 2 | ||
} |
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...t/thredds/public/testdata/zarr/zarr_test_data.zarr/group_with_attrs/F_order_array/.zarray
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{ | ||
"chunks": [ | ||
4, | ||
5 | ||
], | ||
"compressor": null, | ||
"dtype": "<i4", | ||
"fill_value": 0, | ||
"filters": null, | ||
"order": "F", | ||
"shape": [ | ||
20, | ||
20 | ||
], | ||
"zarr_format": 2 | ||
} |
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...t/thredds/public/testdata/zarr/zarr_test_data.zarr/group_with_attrs/F_order_array/.zattrs
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{ | ||
"bar": "apples", | ||
"baz": [ | ||
1, | ||
2, | ||
3, | ||
4 | ||
], | ||
"foo": 42 | ||
} |
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.../content/thredds/public/testdata/zarr/zarr_test_data.zarr/group_with_attrs/nested/.zarray
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{ | ||
"chunks": [ | ||
10, | ||
10 | ||
], | ||
"compressor": null, | ||
"dtype": "<i2", | ||
"fill_value": 0, | ||
"filters": null, | ||
"order": "C", | ||
"shape": [ | ||
20, | ||
20 | ||
], | ||
"zarr_format": 2, | ||
"dimension_separator": "/" | ||
} |
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...t/thredds/public/testdata/zarr/zarr_test_data.zarr/group_with_attrs/partial_fill1/.zarray
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{ | ||
"chunks": [ | ||
10, | ||
10 | ||
], | ||
"compressor": null, | ||
"dtype": "<f4", | ||
"fill_value": 999.0, | ||
"filters": null, | ||
"order": "C", | ||
"shape": [ | ||
20, | ||
20 | ||
], | ||
"zarr_format": 2 | ||
} |
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...t/thredds/public/testdata/zarr/zarr_test_data.zarr/group_with_attrs/partial_fill2/.zarray
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{ | ||
"chunks": [ | ||
10, | ||
10 | ||
], | ||
"compressor": null, | ||
"dtype": "<f4", | ||
"fill_value": 999.0, | ||
"filters": null, | ||
"order": "C", | ||
"shape": [ | ||
20, | ||
20 | ||
], | ||
"zarr_format": 2 | ||
} |
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...t/thredds/public/testdata/zarr/zarr_test_data.zarr/group_with_attrs/uninitialized/.zarray
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{ | ||
"chunks": [ | ||
10, | ||
10 | ||
], | ||
"compressor": null, | ||
"dtype": "<f4", | ||
"fill_value": 999.0, | ||
"filters": null, | ||
"order": "C", | ||
"shape": [ | ||
20, | ||
20 | ||
], | ||
"zarr_format": 2 | ||
} |
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...src/test/content/thredds/public/testdata/zarr/zarr_test_data.zarr/group_with_dims/.zgroup
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{ | ||
"zarr_format": 2 | ||
} |
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...st/content/thredds/public/testdata/zarr/zarr_test_data.zarr/group_with_dims/var1D/.zarray
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{ | ||
"chunks": [ | ||
5 | ||
], | ||
"compressor": null, | ||
"dtype": "<i4", | ||
"fill_value": 0, | ||
"filters": null, | ||
"order": "C", | ||
"shape": [ | ||
20 | ||
], | ||
"zarr_format": 2 | ||
} |
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...st/content/thredds/public/testdata/zarr/zarr_test_data.zarr/group_with_dims/var2D/.zarray
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{ | ||
"chunks": [ | ||
5, | ||
5 | ||
], | ||
"compressor": null, | ||
"dtype": "<i4", | ||
"fill_value": 0, | ||
"filters": null, | ||
"order": "C", | ||
"shape": [ | ||
20, | ||
20 | ||
], | ||
"zarr_format": 2 | ||
} |
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...st/content/thredds/public/testdata/zarr/zarr_test_data.zarr/group_with_dims/var3D/.zarray
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{ | ||
"chunks": [ | ||
5, | ||
5, | ||
5 | ||
], | ||
"compressor": null, | ||
"dtype": "<i4", | ||
"fill_value": 0, | ||
"filters": null, | ||
"order": "C", | ||
"shape": [ | ||
20, | ||
20, | ||
20 | ||
], | ||
"zarr_format": 2 | ||
} |
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