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Microbial genomics extensions / extra functions in R

Dependencies

  • dplyr
  • ggplot2
  • stringr
  • gplots
  • RColorBrewer
  • ggtree
  • phytools
  • ape
  • castor
  • purrr
  • glue
  • tibble
  • seqinr
  • genoplotR
  • vegan
  • UpSetR
  • cowplot
  • Peptides

Install dependencies

install.packages(c("dplyr", "ggplot2", "stringr", "gplots", "RColorBrewer", "phytools", "ape", "castor", "purrr", "glue", "tibble", "seqinr","genoPlotR","vegan", "UpSetR", "cowplot", "Peptides"))

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install(c("ggtree"))

Install micro.gen.extra

install.packages("devtools")
library(devtools)
install_github("djw533/micro.gen.extra")

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